FC920677

Overview
NameFC920677
Unique NameFC920677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15279 contig Ccv1_Contig15279:575..1063. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_BACCN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=metE PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 3.707e-54
Identity = 98/150 (65.33%), Postives = 120/150 (80.00%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF 451
            L+GF+FT NGWVQSYGSRCVKPPII+GDV+    MTV  +  AQS+T + +KGMLTGPVTILNWSFVRND PR E CYQIALA++ E+E LE +GI +IQ+DE ALREG+PL++ +   Y++WAV SFR+    V + TQIHTHMCYSNF
Sbjct:  502 LAGFSFTKNGWVQSYGSRCVKPPIIFGDVAFISDMTVKETVYAQSLTNKVVKGMLTGPVTILNWSFVRNDLPRKEVCYQIALALRHEIERLESSGIRIIQVDEPALREGMPLKEKDWDSYIEWAVQSFRLATASVANETQIHTHMCYSNF 651          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_BIFLO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bifidobacterium longum GN=metE PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 4.841e-54
Identity = 106/161 (65.84%), Postives = 121/161 (75.16%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSE-HAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L+GF FT N WVQSYG+RCVKPPI++GDVSR   +TV WS+ AQS T   MKGMLTGPVTILNWS+ R D    E   Q+ALAI+DEV DLE AGI VIQIDEAALRE LPLRKS+ H  YLDWAV +FR+ +  V+ TTQIHTHMCYS F  +   ID M
Sbjct:  508 LNGFLFTKNAWVQSYGTRCVKPPIVWGDVSRANPITVEWSAYAQSKTDHVMKGMLTGPVTILNWSWPREDITHEEQTKQLALAIRDEVLDLEAAGIKVIQIDEAALREKLPLRKSDWHVKYLDWAVPAFRLVHSAVKPTTQIHTHMCYSEFNDIIRDIDAM 668          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_BIFLD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bifidobacterium longum (strain DJO10A) GN=metE PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 4.841e-54
Identity = 106/161 (65.84%), Postives = 121/161 (75.16%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSE-HAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L+GF FT N WVQSYG+RCVKPPI++GDVSR   +TV WS+ AQS T   MKGMLTGPVTILNWS+ R D    E   Q+ALAI+DEV DLE AGI VIQIDEAALRE LPLRKS+ H  YLDWAV +FR+ +  V+ TTQIHTHMCYS F  +   ID M
Sbjct:  508 LNGFLFTKNAWVQSYGTRCVKPPIVWGDVSRANPITVEWSAYAQSKTDHVMKGMLTGPVTILNWSWPREDITHEEQTKQLALAIRDEVLDLEAAGIKVIQIDEAALREKLPLRKSDWHVKYLDWAVPAFRLVHSAVKPTTQIHTHMCYSEFNDIIRDIDAM 668          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_STRGG (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=metE PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 6.322e-54
Identity = 98/158 (62.03%), Postives = 123/158 (77.85%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHID 475
            L G+  T +GWVQSYG+R V+PP++ GD+SRP+ MTV W++ AQS+TARP+KGMLTGPVT+L WSFVR+DQP  +T  Q+ALA++DEV DLE  G +VIQ+DE ALRE LPLR +EHA YL+WA  SFRI   GV+  TQIHTHMCY+ F  +   ID
Sbjct:  513 LDGYLATQHGWVQSYGTRYVRPPVLAGDISRPEPMTVRWTTYAQSLTARPVKGMLTGPVTMLAWSFVRDDQPLGDTARQVALALRDEVNDLEANGTSVIQVDEPALRETLPLRAAEHAAYLEWATESFRIATSGVRPDTQIHTHMCYAEFGDIVQAID 670          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_SODGM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Sodalis glossinidius (strain morsitans) GN=metE PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 6.322e-54
Identity = 102/157 (64.97%), Postives = 117/157 (74.52%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHI 472
            L GF FT NGWVQSYGSRCVKPPII GD+SRP+A+T+ W+  AQS+TA+P+KGMLTGPVTIL WSF R D  R     QIALA++DEV DLE+AGI VIQIDE ALREGLPL+ S    YL WAV +FR+     QD TQIHTHMCY  F  +   I
Sbjct:  501 LDGFVFTQNGWVQSYGSRCVKPPIIIGDISRPEAITIEWARYAQSLTAKPVKGMLTGPVTILCWSFPREDVSRKTIARQIALALRDEVADLEQAGIGVIQIDEPALREGLPLKHSAWQDYLTWAVEAFRLNAAVAQDDTQIHTHMCYCEFNDIMDSI 657          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_MYCLE (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mycobacterium leprae GN=metE PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 6.322e-54
Identity = 98/150 (65.33%), Postives = 119/150 (79.33%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF 451
            L GF  T NGWVQSYGSRCV+PPI+YGDVSRP  MT+ W + AQS+T +P+KGMLTGPVTIL WSFVR+DQP  +T  Q+ALAI+DE  DL+ AGI +IQ+DE ALRE LPLR+++   YL WAV +FR+   GV D+TQIHTH+CYS F
Sbjct:  504 LGGFFATQNGWVQSYGSRCVRPPILYGDVSRPHPMTIEWITYAQSLTDKPVKGMLTGPVTILAWSFVRDDQPLADTANQVALAIRDETVDLQSAGIAIIQVDEPALRELLPLRRADQDEYLCWAVKAFRLATSGVADSTQIHTHLCYSEF 653          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_BIFAA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=metE PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 6.322e-54
Identity = 104/161 (64.60%), Postives = 122/161 (75.78%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSE-HAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L+GF FT N WVQSYG+RCVKPPI++GDVSR   +TV WS+ AQS T   MKGMLTGPVTILNWS+ R D    +   Q+ALAI+DEV DLEKAGI VIQIDEAALRE LPLRK++ H  YLDWA+ +FR+ +  V+ TTQIHTHMCYS F  +   ID M
Sbjct:  509 LNGFLFTKNAWVQSYGTRCVKPPIVWGDVSRANPITVEWSAYAQSRTDHVMKGMLTGPVTILNWSWPREDITHEQQTQQLALAIRDEVLDLEKAGIKVIQIDEAALREKLPLRKTDWHKKYLDWAIPAFRLVHSAVKPTTQIHTHMCYSEFNDIIKDIDAM 669          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_PSEU5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas stutzeri (strain A1501) GN=metE PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.078e-53
Identity = 103/160 (64.38%), Postives = 116/160 (72.50%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L G+ FT  GWVQSYGSRCVKP IIYGD+SRP+ MTV W   AQ  T R MKGMLTGPVT+L WSF R D PR     Q+ALAI+DEV DLE AGI +IQIDEAA REGLPLR+ +   YLDWAV +FR+   GV+D TQIHTHMCYS F  +   I  M
Sbjct:  510 LEGYVFTRFGWVQSYGSRCVKPAIIYGDLSRPRPMTVDWIRYAQQQTDRIMKGMLTGPVTMLMWSFAREDVPREVQARQLALAIRDEVCDLEAAGIRIIQIDEAAFREGLPLRREQWRHYLDWAVEAFRLCASGVRDETQIHTHMCYSEFNDVIESIAAM 669          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_LACLS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=metE PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.078e-53
Identity = 99/161 (61.49%), Postives = 127/161 (78.88%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSE-HAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L G+ FT   WVQSYG+RCVKPPI++GD++RP+AMTV WS+ AQS T++P+KGMLTGPVTILNWSF R D    E+  Q+ALA+++EV DLEKAGI +IQIDEAALRE LPLR+S+ ++ YLDW++ +FR+ +  V+  TQIHTHMCYS F  +   ID M
Sbjct:  495 LDGYIFTQKAWVQSYGTRCVKPPIVWGDITRPQAMTVRWSAYAQSQTSKPVKGMLTGPVTILNWSFPREDISLKESTLQLALAVQEEVLDLEKAGIKIIQIDEAALREKLPLRRSDWYSEYLDWSIPAFRLVHSKVKAETQIHTHMCYSEFEDIIPSIDAM 655          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_LACLM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metE PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.408e-53
Identity = 98/161 (60.87%), Postives = 127/161 (78.88%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSE-HAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L G+ FT   WVQSYG+RCVKPPI++GD++RP+AMTV WS+ AQS T++P+KGMLTGPVTILNWSF R D    E+  Q+ALA+++EV DLEK+G+ +IQIDEAALRE LPLR+S+ ++ YLDWA+ +FR+ +  V+  TQIHTHMCYS F  +   ID M
Sbjct:  495 LDGYIFTQKAWVQSYGTRCVKPPIVWGDITRPQAMTVRWSAYAQSQTSKPVKGMLTGPVTILNWSFPREDISLKESTLQLALAVQEEVLDLEKSGVKIIQIDEAALREKLPLRRSDWYSEYLDWAIPAFRLVHSKVKAETQIHTHMCYSEFEDIIPSIDAM 655          
The following BLAST results are available for this feature:
BLAST of FC920677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
METE_BACCN3.707e-5465.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BIFLO4.841e-5465.845-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BIFLD4.841e-5465.845-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STRGG6.322e-5462.035-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SODGM6.322e-5464.975-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MYCLE6.322e-5465.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BIFAA6.322e-5464.605-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEU51.078e-5364.385-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_LACLS1.078e-5361.495-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_LACLM1.408e-5360.875-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC32011F03EF RVDevelop1 Citrus clementina cDNA clone C32011F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920677 ID=FC920677; Name=FC920677; organism=Citrus clementina; type=EST; length=489bp
ATTATCAGGTTTCGCCTTCACTGCCAATGGGTGGGTGCAATCCTATGGAT
CTCGCTGTGTGAAGCCACCCATCATCTATGGTGATGTGAGCCGTCCCAAG
GCTATGACCGTCTTCTGGTCCTCCTTGGCTCAGAGCATGACAGCTCGCCC
AATGAAAGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGGTCCTTTG
TTAGAAATGACCAGCCCAGACATGAAACCTGCTACCAGATTGCTTTGGCC
ATCAAGGACGAAGTCGAGGATCTTGAGAAGGCAGGCATTAACGTTATTCA
AATTGATGAGGCTGCCTTGAGGGAAGGATTGCCTCTTAGGAAATCTGAGC
ATGCTTTCTACTTGGACTGGGCAGTCCACTCCTTCAGAATCACCAACTGT
GGCGTCCAGGACACTACCCAGATCCACACCCACATGTGCTACTCCAACTT
CACGACATTATCCACTCATATCGACATGATGCTGATGTG
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