FC920677

Overview
NameFC920677
Unique NameFC920677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15279 contig Ccv1_Contig15279:575..1063. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_KLEP7 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=metE PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.408e-53
Identity = 99/157 (63.06%), Postives = 117/157 (74.52%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHI 472
            L GF FT NGWVQSYGSRCVKPP++ GDVSRP+A+TV W+  AQS+TA+P+KGMLTGPVTIL WSF R D  R     QIALA++DEV DLE AGI +IQIDE ALREGLPL++S+   YL W V +FR+     +D TQIHTHMCY  F  +   I
Sbjct:  498 LDGFIFTQNGWVQSYGSRCVKPPVVIGDVSRPQAITVDWAKYAQSLTAKPVKGMLTGPVTILCWSFPREDVSRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLKRSDWDAYLQWGVEAFRLNAAVAKDDTQIHTHMCYCEFNDIMDSI 654          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_AERS4 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Aeromonas salmonicida (strain A449) GN=metE PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.408e-53
Identity = 98/153 (64.05%), Postives = 117/153 (76.47%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTL 460
            L GFA T  GWVQSYGSRCVKPP+I  D+ RP  MT+ W+  AQS+T +P+KGMLTGPVTIL WSF R D  R ++  QI LAI+DEV DLE AGI +IQIDE A+REGLPLRK +H  YLDWAV +FR++   V D+TQIHTHMCYS+F  +
Sbjct:  497 LDGFAITRFGWVQSYGSRCVKPPVITTDIDRPTPMTLEWTKFAQSLTDKPVKGMLTGPVTILCWSFPREDVSREQSALQIGLAIRDEVADLEAAGIKIIQIDEPAIREGLPLRKQDHQAYLDWAVRAFRLSASPVVDSTQIHTHMCYSDFNLI 649          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_ERWCT (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Erwinia carotovora subsp. atroseptica GN=metE PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.840e-53
Identity = 101/157 (64.33%), Postives = 116/157 (73.89%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHI 472
            L GF FT NGWVQSYGSRCVKPP+I GDVSRP+A+TV W+  AQS+T +PMKGMLTGPVTIL WSF R D  R     QIALA++DEV DLE AGI +IQIDE ALREGLPL +S+   YL WAV +FR+     +D TQIHTHMCY  F  +   I
Sbjct:  498 LDGFVFTQNGWVQSYGSRCVKPPVIIGDVSRPEAITVEWAKYAQSLTDKPMKGMLTGPVTILCWSFPREDVTRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLHRSDWDAYLAWAVDAFRLNAAVAKDDTQIHTHMCYCEFNDIMDSI 654          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_CAMJD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=metE PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.840e-53
Identity = 104/161 (64.60%), Postives = 124/161 (77.02%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSE-HAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L GF FT NGWVQSYG+RCVKPPII+GDVSR K +T+  S  AQS++ + +KGMLTGPVTILNWSF R D    E+  QIALAI+DEV DLE AGI +IQIDEAALRE LPLRKS+ H+ YLDWA+ +F + + GV+  TQIHTHMCYS F+ +   ID M
Sbjct:  497 LKGFLFTQNGWVQSYGTRCVKPPIIWGDVSRTKPITLACSKFAQSLSQKIVKGMLTGPVTILNWSFPREDISLKESTEQIALAIRDEVLDLENAGIKIIQIDEAALREKLPLRKSDWHSEYLDWAIPAFNLVHSGVKAKTQIHTHMCYSEFSDILKEIDAM 657          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_ECO5E (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=metE PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 3.138e-53
Identity = 101/157 (64.33%), Postives = 114/157 (72.61%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHI 472
            L GF FT NGWVQSYGSRCVKPPI+ GDVSRP  +TV W+  AQSMT +P+KGMLTGPVTIL WSF R D  R     QIALA++DEV DLE AGI +IQIDE ALREGLPLR+S+   YL W V +FRI     +D TQIHTHMCY  F  +   I
Sbjct:  498 LDGFVFTQNGWVQSYGSRCVKPPIVIGDVSRPAPITVEWAKYAQSMTDKPVKGMLTGPVTILCWSFPREDVSRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLRRSDWDAYLQWGVEAFRINAAVAKDDTQIHTHMCYCEFNDIMDSI 654          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_ECO57 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Escherichia coli O157:H7 GN=metE PE=3 SV=3)

HSP 1 Score: 207.223 bits (526), Expect = 3.138e-53
Identity = 101/157 (64.33%), Postives = 114/157 (72.61%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHI 472
            L GF FT NGWVQSYGSRCVKPPI+ GDVSRP  +TV W+  AQSMT +P+KGMLTGPVTIL WSF R D  R     QIALA++DEV DLE AGI +IQIDE ALREGLPLR+S+   YL W V +FRI     +D TQIHTHMCY  F  +   I
Sbjct:  498 LDGFVFTQNGWVQSYGSRCVKPPIVIGDVSRPAPITVEWAKYAQSMTDKPVKGMLTGPVTILCWSFPREDVSRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLRRSDWDAYLQWGVEAFRINAAVAKDDTQIHTHMCYCEFNDIMDSI 654          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_DESVH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=metE PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 3.138e-53
Identity = 96/150 (64.00%), Postives = 118/150 (78.67%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF 451
            L GF  T++GWVQSYG+RCVKPP++YGDVSRP+ MTV WS+ A+S+TARPMK MLTGPVTI  WSFVR+D  R     Q+ALA++DEV DLE AG+ V+Q+DE ALREGLPLR++    YLD AV +FR+   GV D TQ+HTHMCY +F
Sbjct:  527 LQGFCITSDGWVQSYGTRCVKPPLLYGDVSRPEPMTVAWSAYARSLTARPMKAMLTGPVTIACWSFVRDDISRETVLRQLALALRDEVADLESAGLAVVQVDEPALREGLPLRRAAQEAYLDAAVRAFRLATSGVADATQLHTHMCYCDF 676          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_PSEA7 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas aeruginosa (strain PA7) GN=metE PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 4.098e-53
Identity = 98/160 (61.25%), Postives = 119/160 (74.38%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L G+AFT  GWVQSYGSRCVKP +IYGD+SRP+ MTV W   AQS+T + MKGMLTGPVT+L WSF R D  R     Q+ALA++DEV DLE+AGI ++QIDEAA REGLPLR+++   YL+WA  +FR+   GV+D TQIHTHMCYS F  +   I  M
Sbjct:  505 LDGYAFTRFGWVQSYGSRCVKPAVIYGDLSRPRPMTVEWIRYAQSLTGKVMKGMLTGPVTMLMWSFPREDVSREVQARQLALALRDEVSDLEQAGIRIVQIDEAAFREGLPLRRADWPHYLEWATEAFRLCASGVRDETQIHTHMCYSEFNDVIESIAAM 664          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_PROMH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Proteus mirabilis (strain HI4320) GN=metE PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 5.352e-53
Identity = 96/151 (63.58%), Postives = 116/151 (76.82%), Query Frame = 2
Query:    8 GFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTL 460
            G+ FT NGWVQSYGSRCVKPP+I GD+SRP  +TV W++ AQS+T +P+KGMLTGPVTIL WSF R D  R     QIALA++DEV+DL+KAGI +IQIDE ALREGLPLR+ E   YLDWAV +F+++     D TQIHTHMCY  F  +
Sbjct:  503 GYVFTQNGWVQSYGSRCVKPPVIIGDISRPAPITVDWATYAQSLTDKPVKGMLTGPVTILCWSFPREDVSRETIAKQIALALRDEVDDLQKAGIGIIQIDEPALREGLPLRRDEWQAYLDWAVDAFKLSAAIADDETQIHTHMCYCEFNDI 653          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_ENT38 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Enterobacter sp. (strain 638) GN=metE PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 5.352e-53
Identity = 99/157 (63.06%), Postives = 116/157 (73.89%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHI 472
            L GF FT NGWVQSYGSRCVKPP++ GDVSRP+A+TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R     QIALA++DEV DLE AGI +IQIDE ALREGLPLR+S+   YL W V +FRI     ++ TQIHTHMCY  F  +   I
Sbjct:  498 LDGFVFTQNGWVQSYGSRCVKPPVVIGDVSRPEAITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVTRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLRRSDWDAYLQWGVEAFRINAAVAKNDTQIHTHMCYCEFNDIMDSI 654          
The following BLAST results are available for this feature:
BLAST of FC920677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
METE_KLEP71.408e-5363.065-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_AERS41.408e-5364.055-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ERWCT1.840e-5364.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CAMJD1.840e-5364.605-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ECO5E3.138e-5364.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ECO573.138e-5364.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_DESVH3.138e-5364.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEA74.098e-5361.255-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PROMH5.352e-5363.585-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ENT385.352e-5363.065-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC32011F03EF RVDevelop1 Citrus clementina cDNA clone C32011F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920677 ID=FC920677; Name=FC920677; organism=Citrus clementina; type=EST; length=489bp
ATTATCAGGTTTCGCCTTCACTGCCAATGGGTGGGTGCAATCCTATGGAT
CTCGCTGTGTGAAGCCACCCATCATCTATGGTGATGTGAGCCGTCCCAAG
GCTATGACCGTCTTCTGGTCCTCCTTGGCTCAGAGCATGACAGCTCGCCC
AATGAAAGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGGTCCTTTG
TTAGAAATGACCAGCCCAGACATGAAACCTGCTACCAGATTGCTTTGGCC
ATCAAGGACGAAGTCGAGGATCTTGAGAAGGCAGGCATTAACGTTATTCA
AATTGATGAGGCTGCCTTGAGGGAAGGATTGCCTCTTAGGAAATCTGAGC
ATGCTTTCTACTTGGACTGGGCAGTCCACTCCTTCAGAATCACCAACTGT
GGCGTCCAGGACACTACCCAGATCCACACCCACATGTGCTACTCCAACTT
CACGACATTATCCACTCATATCGACATGATGCTGATGTG
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