FC920677

Overview
NameFC920677
Unique NameFC920677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15279 contig Ccv1_Contig15279:575..1063. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_PSEF5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=metE PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.722e-51
Identity = 98/160 (61.25%), Postives = 115/160 (71.88%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L G+ FT  GWVQSYGSRCVKP +I+GD+SRP AMTV W   AQ +T + MKGMLTGPVT+L WSF R D  R     Q+ALAI+DEV DLE AGI ++QIDEAA REGLPLR+++   YLDWA   FR+   GV+D TQIHTHMCYS F  +   I  M
Sbjct:  505 LDGYVFTRFGWVQSYGSRCVKPALIFGDLSRPNAMTVEWIRYAQGLTDKVMKGMLTGPVTMLMWSFPREDVSREVQARQLALAIRDEVLDLEAAGIRIVQIDEAAFREGLPLRRAQWQHYLDWATEVFRLCASGVRDETQIHTHMCYSEFNDVIESIAAM 664          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_BACWK (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bacillus weihenstephanensis (strain KBAB4) GN=metE PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.722e-51
Identity = 95/150 (63.33%), Postives = 117/150 (78.00%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF 451
            L+GF+FT NGWVQSYGSRCVKPP+IYGDV+    MT+  +  AQS+T + +KGMLTGPVTILNWSFVRND  R E  YQIALA++ E+E LE +GI VIQ+DE ALREG+PL++ +   Y+ WAV SF +    V++ TQIHTHMCYSNF
Sbjct:  502 LAGFSFTKNGWVQSYGSRCVKPPVIYGDVAFISGMTIKETVYAQSLTEKVVKGMLTGPVTILNWSFVRNDISRKEVSYQIALALRHEIELLESSGIRVIQVDEPALREGMPLKEKDWDAYITWAVQSFLLATSSVENETQIHTHMCYSNF 651          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_BUCAP (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=metE PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 2.937e-51
Identity = 100/150 (66.67%), Postives = 114/150 (76.00%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF 451
            L GF FT NGWVQSYGSRCVKPPII GDVSR K +TV WS  AQS+T +P+K MLTGPVTIL WSF R D    +   QI LA++DEV DLEK  I +IQIDE ALREGLPLRKS    YL WAV +FR+++ GV++TTQIHTHMCY  F
Sbjct:  497 LDGFIFTDNGWVQSYGSRCVKPPIIIGDVSRLKPITVKWSKYAQSLTDKPVKAMLTGPVTILFWSFPREDISLEKIAKQIGLALRDEVLDLEKEKIEIIQIDEPALREGLPLRKSLWNEYLSWAVDAFRLSSSGVKNTTQIHTHMCYCEF 646          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_THEYD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=metE PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 3.836e-51
Identity = 95/157 (60.51%), Postives = 117/157 (74.52%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHI 472
            L GFA T NGWVQSYGSRCV+PP+IYGDV R KA+TV  +  AQS+T RP+KG++TG VTIL WS+ R D  R E  YQIALA+K+EV +LEK GI +IQIDE A REGLPL++++   Y DW ++SFR+T   V   TQIHTHMCYS+F  +   I
Sbjct:  488 LKGFAITKNGWVQSYGSRCVRPPVIYGDVWRDKALTVEETLYAQSLTPRPVKGIMTGAVTILQWSYPRKDISRREIAYQIALALKEEVLELEKRGIKIIQIDEPAFREGLPLKRNKQDEYFDWTINSFRLTTADVSPFTQIHTHMCYSDFNEIIDRI 644          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_BACP2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bacillus pumilus (strain SAFR-032) GN=metE PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 3.836e-51
Identity = 99/158 (62.66%), Postives = 119/158 (75.32%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHID 475
            L+GFAFT   WVQSYGSRCVKPPIIYGDV     MTV  +  AQS+T + +KGMLTGPVTILNWSF R D  R +  +QIA A++ EVE LE+AGI VIQ+DE ALREGLPL++S+ A YL+WA  SFR++   VQ+ TQIHTHMCYSNF  +   I+
Sbjct:  502 LAGFAFTKFAWVQSYGSRCVKPPIIYGDVEFTAPMTVKETVYAQSLTEKKVKGMLTGPVTILNWSFPRTDISRKDIAFQIAFALRKEVEALEEAGIQVIQVDEPALREGLPLKESDWADYLNWAAESFRLSTSSVQNETQIHTHMCYSNFEDIVDTIE 659          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_BACHD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bacillus halodurans GN=metE PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 3.836e-51
Identity = 101/158 (63.92%), Postives = 119/158 (75.32%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHID 475
            L GFAFTANGWVQSYGSRCVKPPIIYG+VS  + MTV  +  AQS+T +P+KGMLTGPVTILNWSFVR+D P     +QIA A+  EV  LE+AGI +IQIDE A+REGLPL+  +   YLDWAV +FR +   V+ TTQIHTHMCYS F  +   ID
Sbjct:  496 LDGFAFTANGWVQSYGSRCVKPPIIYGNVSFTEPMTVAETVYAQSLTDKPVKGMLTGPVTILNWSFVRDDLPLTVIAHQIAEALTHEVTALEEAGIEMIQIDEPAIREGLPLKAEDQQEYLDWAVSAFRASCAHVKATTQIHTHMCYSEFHEMIEAID 653          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_THEEB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=metE PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 5.010e-51
Identity = 97/160 (60.62%), Postives = 118/160 (73.75%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            LSGFAFT +GWVQSYGSRCV+PPIIYGD++RP+ MTV    +AQS+T + +K MLTGPVT++NWSF R D PR E   QIALA++DEV DLE AG  +IQIDE ALREGLPL+      YL WAV +FR+     +  TQIHTHMCYS F  +  HI+ +
Sbjct:  495 LSGFAFTEHGWVQSYGSRCVRPPIIYGDIARPQPMTVREFKVAQSLTDKIVKAMLTGPVTMINWSFTRTDIPRSEQAMQIALALRDEVADLEAAGAKMIQIDEPALREGLPLKAERWNEYLSWAVDAFRLAAGVAKPETQIHTHMCYSEFGDIIEHIERL 654          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_HERA2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=metE PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 6.543e-51
Identity = 94/153 (61.44%), Postives = 117/153 (76.47%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTL 460
            L+G+  T  GWVQSYGSRCV+PP+I GDV R  A++V  ++ AQS+T RP+KGMLTGPVT+L WSFVR+D PR     QI LA++DEV DLE AGIN+IQIDE A REGLPLR+++   YLDWAV +FRI     + +TQIHTHMCYS+F  +
Sbjct:  492 LAGYVATQEGWVQSYGSRCVRPPVIAGDVYRTAALSVAETAYAQSLTKRPVKGMLTGPVTMLQWSFVRDDLPRSAVAAQIGLALRDEVTDLEAAGINIIQIDEPAFREGLPLRRNDWQNYLDWAVRAFRIATSDAKPSTQIHTHMCYSDFNDI 644          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_BUCBP (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=metE PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 8.545e-51
Identity = 97/160 (60.62%), Postives = 120/160 (75.00%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L+GF FT  GWVQSYGSRCVKPPII GDVSR K +++ W   AQ++T++P+KGMLTGPVTIL WSFVR D  +     QIALA++DEV DLE++G+ +IQIDE ALREGLPLR S    YL WAV SF++++ GV D TQIHTHMCY  F  +   I ++
Sbjct:  500 LNGFVFTEFGWVQSYGSRCVKPPIIIGDVSRSKPISLDWIKYAQTLTSKPVKGMLTGPVTILLWSFVREDLSKKIISRQIALALRDEVLDLEQSGVKIIQIDEPALREGLPLRLSLRNEYLSWAVDSFKLSSSGVCDETQIHTHMCYCEFNDIMNAIVLL 659          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_SCHPO (Probable 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Schizosaccharomyces pombe GN=SPAC9.09 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.116e-50
Identity = 96/153 (62.75%), Postives = 113/153 (73.86%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTL 460
            + GF FT NGWVQSYGSRCV+PPII GDV RP  MTV  S  AQS+T++PMKGMLT P+TIL WSF R+D        QIAL ++DEV DLEKAGI VIQ DE ALREGLPLR++E   YL WA+ +FR+    VQD TQIH+H CYS+F  +
Sbjct:  509 MEGFVFTVNGWVQSYGSRCVRPPIIVGDVYRPAPMTVKESQYAQSITSKPMKGMLTAPITILRWSFPRDDVHDSVQAQQIALGLRDEVLDLEKAGIKVIQCDEPALREGLPLRRAEWDEYLKWAIDAFRLATAAVQDDTQIHSHFCYSDFNDI 661          
The following BLAST results are available for this feature:
BLAST of FC920677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
METE_PSEF51.722e-5161.255-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BACWK1.722e-5163.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BUCAP2.937e-5166.675-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_THEYD3.836e-5160.515-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BACP23.836e-5162.665-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BACHD3.836e-5163.925-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_THEEB5.010e-5160.635-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_HERA26.543e-5161.445-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BUCBP8.545e-5160.635-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SCHPO1.116e-5062.75Probable 5-methyltetrahydropteroyltriglutamate--ho... [more]

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Properties
Property NameValue
Genbank descriptionC32011F03EF RVDevelop1 Citrus clementina cDNA clone C32011F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920677 ID=FC920677; Name=FC920677; organism=Citrus clementina; type=EST; length=489bp
ATTATCAGGTTTCGCCTTCACTGCCAATGGGTGGGTGCAATCCTATGGAT
CTCGCTGTGTGAAGCCACCCATCATCTATGGTGATGTGAGCCGTCCCAAG
GCTATGACCGTCTTCTGGTCCTCCTTGGCTCAGAGCATGACAGCTCGCCC
AATGAAAGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGGTCCTTTG
TTAGAAATGACCAGCCCAGACATGAAACCTGCTACCAGATTGCTTTGGCC
ATCAAGGACGAAGTCGAGGATCTTGAGAAGGCAGGCATTAACGTTATTCA
AATTGATGAGGCTGCCTTGAGGGAAGGATTGCCTCTTAGGAAATCTGAGC
ATGCTTTCTACTTGGACTGGGCAGTCCACTCCTTCAGAATCACCAACTGT
GGCGTCCAGGACACTACCCAGATCCACACCCACATGTGCTACTCCAACTT
CACGACATTATCCACTCATATCGACATGATGCTGATGTG
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