FC920677

Overview
NameFC920677
Unique NameFC920677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15279 contig Ccv1_Contig15279:575..1063. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_ALHEH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=metE PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 4.089e-61
Identity = 112/153 (73.20%), Postives = 123/153 (80.39%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTL 460
            L GFAFT  GWVQSYGSRCVKPPIIYGDVSRP+ MTV WS  AQS+T RPMKGMLTGPVT+L WSFVR+DQPR ETC QIALA++DEV DLE AGI  IQIDE ALREGLPL++ +   YLDWAV  FR+T    QD TQIHTHMCYS F  +
Sbjct:  504 LDGFAFTRAGWVQSYGSRCVKPPIIYGDVSRPRPMTVRWSEYAQSLTGRPMKGMLTGPVTVLQWSFVRDDQPRSETCRQIALALRDEVADLEAAGIPAIQIDEPALREGLPLQQRQWPGYLDWAVDCFRLTASVAQDATQIHTHMCYSEFNDI 656          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_NEIG1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=metE PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 5.340e-61
Identity = 112/160 (70.00%), Postives = 130/160 (81.25%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            LSGFAFT  GWVQSYGSRCVKPPII+GDVSRP+AMTV WS+ AQ++T RPMKGMLTGPVTIL WSFVRND PR   C QIALA+ DEV DLEKAGI VIQIDE A+REGLPL++++   YL+WA  SFR+++ G +D+TQIHTHMCYS F  +   I  M
Sbjct:  500 LSGFAFTQYGWVQSYGSRCVKPPIIFGDVSRPEAMTVAWSTYAQNLTKRPMKGMLTGPVTILQWSFVRNDIPRATVCKQIALALNDEVLDLEKAGIKVIQIDEPAIREGLPLKRADWDAYLNWAGESFRLSSAGCEDSTQIHTHMCYSEFNDILPAIAAM 659          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_BORPE (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bordetella pertussis GN=metE PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 5.340e-61
Identity = 110/160 (68.75%), Postives = 129/160 (80.62%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L+GFAFT NGWVQSYGSRCVKPPII+GDV+RP  MTV WS+ AQS+T +P+KGMLTGPVTIL WSFVR+DQPR  TC Q+ALA++DEV DLE AGI VIQIDE A+REGLPLR+++   YLDWAV  FR++  GV + TQIHTHMCYS F  +   I  M
Sbjct:  509 LAGFAFTKNGWVQSYGSRCVKPPIIFGDVARPAPMTVGWSAYAQSLTDKPVKGMLTGPVTILQWSFVRDDQPREATCRQLALALRDEVVDLEAAGIRVIQIDEPAIREGLPLRRADWRAYLDWAVDCFRLSTAGVGEATQIHTHMCYSEFNDIIESIAAM 668          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_BORPA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bordetella parapertussis GN=metE PE=3 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 5.340e-61
Identity = 110/160 (68.75%), Postives = 129/160 (80.62%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L+GFAFT NGWVQSYGSRCVKPPII+GDV+RP  MTV WS+ AQS+T +P+KGMLTGPVTIL WSFVR+DQPR  TC Q+ALA++DEV DLE AGI VIQIDE A+REGLPLR+++   YLDWAV  FR++  GV + TQIHTHMCYS F  +   I  M
Sbjct:  509 LAGFAFTKNGWVQSYGSRCVKPPIIFGDVARPAPMTVGWSAYAQSLTDKPVKGMLTGPVTILQWSFVRDDQPREATCRQLALALRDEVVDLEAAGIRVIQIDEPAIREGLPLRRADWRAYLDWAVDCFRLSTAGVGEATQIHTHMCYSEFNDIIESIAAM 668          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_BORBR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bordetella bronchiseptica GN=metE PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 5.340e-61
Identity = 110/160 (68.75%), Postives = 129/160 (80.62%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L+GFAFT NGWVQSYGSRCVKPPII+GDV+RP  MTV WS+ AQS+T +P+KGMLTGPVTIL WSFVR+DQPR  TC Q+ALA++DEV DLE AGI VIQIDE A+REGLPLR+++   YLDWAV  FR++  GV + TQIHTHMCYS F  +   I  M
Sbjct:  509 LAGFAFTKNGWVQSYGSRCVKPPIIFGDVARPAPMTVGWSAYAQSLTDKPVKGMLTGPVTILQWSFVRDDQPREATCRQLALALRDEVVDLEAAGIRVIQIDEPAIREGLPLRRADWRAYLDWAVDCFRLSTAGVGEATQIHTHMCYSEFNDIIESIAAM 668          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_PELCD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=metE PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.554e-60
Identity = 111/160 (69.38%), Postives = 128/160 (80.00%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L+GF FT NGWVQ YGSRCVKPPIIYGDV R K MT+ W++ AQ  T RP+KGMLTGPVT+L WSFVR+DQPR  TC QIALAI+DEV+DLE+AGI +IQ+DEAALREGLPLRKS    YL WAV +FR+T  GV D+TQIHTHMCYS F  ++  I  M
Sbjct:  500 LAGFCFTENGWVQGYGSRCVKPPIIYGDVERLKPMTMEWTTYAQQQTNRPLKGMLTGPVTMLCWSFVRDDQPRSATCKQIALAIRDEVQDLEQAGIKIIQVDEAALREGLPLRKSAWREYLGWAVDAFRLTASGVADSTQIHTHMCYSEFNHIAEWIAKM 659          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_THIDA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=metE PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 2.650e-60
Identity = 110/160 (68.75%), Postives = 127/160 (79.38%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L G+AF+  GWVQSYGSRCVKPPI++GDV RP+ MTV W+   QS+T +PMKGMLTGPVT+LNWSFVR+DQPR E+C Q+AL I+DEV DLEKAG+ VIQIDEAALREGLPLR+S+   YL WAV SFRI   GV D TQIHTHMCYS F  +   I  M
Sbjct:  509 LDGYAFSRFGWVQSYGSRCVKPPILFGDVRRPRPMTVEWTRYGQSLTEKPMKGMLTGPVTLLNWSFVRDDQPRAESCKQLALTIRDEVADLEKAGVRVIQIDEAALREGLPLRRSQWKTYLGWAVESFRIAANGVADETQIHTHMCYSEFNDIIEAIAAM 668          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_RUTMC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=metE PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 3.461e-60
Identity = 107/160 (66.88%), Postives = 130/160 (81.25%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            LSG+ F+  GWVQSYGSRCVKPPII+GD+ RPK MT+ W + AQS+T +PMKGM+TGPVT+LNWSFVR+DQPR  TC Q++LAI+DEV DLEK+ IN+IQIDEAALREGLPLRKS+   YLDWA+ ++R++  GV D TQIHTHMCYS F  +   I  M
Sbjct:  503 LSGYVFSQFGWVQSYGSRCVKPPIIFGDIFRPKPMTLDWITYAQSLTNKPMKGMITGPVTMLNWSFVRDDQPRATTCLQLSLAIRDEVLDLEKSNINIIQIDEAALREGLPLRKSQWQTYLDWAIRAYRVSANGVSDETQIHTHMCYSEFNDIIEAIAQM 662          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_PARL1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=metE PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.007e-59
Identity = 110/153 (71.90%), Postives = 124/153 (81.05%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTL 460
            L GFAFT+ GWVQSYGSRCVKPPII+GDVSRP+ MTV WS  AQS+T RP+KGMLTGPVTIL WSFVR+DQPR ETC QIALAI+DEV DLE AG+ +IQIDE ALREGLPL +SE   YL WA   FR++ C  +D TQIHTHMCYS F  +
Sbjct:  505 LEGFAFTSLGWVQSYGSRCVKPPIIFGDVSRPEPMTVEWSRYAQSLTDRPVKGMLTGPVTILQWSFVRDDQPRSETCRQIALAIRDEVYDLEAAGLGMIQIDEPALREGLPLHRSEWDTYLRWACECFRLSVCVARDETQIHTHMCYSEFNDI 657          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_PSYIN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Psychromonas ingrahamii (strain 37) GN=metE PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.315e-59
Identity = 111/160 (69.38%), Postives = 127/160 (79.38%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L GF FT   WVQSYGSRCVKPPI++GDVSRPKAMTV WSS AQS+T + +KGMLTGPVTILNWSFVR+DQP   TC QIALAI++EV DLEKAGIN+IQIDEAALRE LPL +S+   YL+WA+ +FR+   GV D TQIHTHMCYS F  +   I  M
Sbjct:  512 LDGFVFTQFAWVQSYGSRCVKPPILFGDVSRPKAMTVEWSSYAQSLTEKKVKGMLTGPVTILNWSFVRDDQPLQTTCMQIALAIREEVLDLEKAGINIIQIDEAALREKLPLHRSQWQQYLNWAIAAFRLCANGVNDKTQIHTHMCYSEFNDIIAAIAQM 671          
The following BLAST results are available for this feature:
BLAST of FC920677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
METE_ALHEH4.089e-6173.205-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NEIG15.340e-6170.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BORPE5.340e-6168.755-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BORPA5.340e-6168.755-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BORBR5.340e-6168.755-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PELCD1.554e-6069.385-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_THIDA2.650e-6068.755-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RUTMC3.461e-6066.885-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PARL11.007e-5971.905-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSYIN1.315e-5969.385-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC32011F03EF RVDevelop1 Citrus clementina cDNA clone C32011F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920677 ID=FC920677; Name=FC920677; organism=Citrus clementina; type=EST; length=489bp
ATTATCAGGTTTCGCCTTCACTGCCAATGGGTGGGTGCAATCCTATGGAT
CTCGCTGTGTGAAGCCACCCATCATCTATGGTGATGTGAGCCGTCCCAAG
GCTATGACCGTCTTCTGGTCCTCCTTGGCTCAGAGCATGACAGCTCGCCC
AATGAAAGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGGTCCTTTG
TTAGAAATGACCAGCCCAGACATGAAACCTGCTACCAGATTGCTTTGGCC
ATCAAGGACGAAGTCGAGGATCTTGAGAAGGCAGGCATTAACGTTATTCA
AATTGATGAGGCTGCCTTGAGGGAAGGATTGCCTCTTAGGAAATCTGAGC
ATGCTTTCTACTTGGACTGGGCAGTCCACTCCTTCAGAATCACCAACTGT
GGCGTCCAGGACACTACCCAGATCCACACCCACATGTGCTACTCCAACTT
CACGACATTATCCACTCATATCGACATGATGCTGATGTG
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