FC920677

Overview
NameFC920677
Unique NameFC920677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15279 contig Ccv1_Contig15279:575..1063. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_RALSO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia solanacearum GN=metE PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 1.718e-59
Identity = 109/160 (68.12%), Postives = 126/160 (78.75%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L G+AFTANGWVQSYGSRCVKPP+IYGDV RP+ MTV WS  AQS+TA+PMKGMLTGPVT+L WSFVR+DQPR +T  QIALA++DEV DLE AGI  IQIDE A REGLPLR  + A YL+WA   FR++  GV++ TQIHTHMCYS F  +   I  M
Sbjct:  499 LWGYAFTANGWVQSYGSRCVKPPVIYGDVYRPEPMTVEWSRYAQSLTAKPMKGMLTGPVTMLQWSFVRDDQPREQTALQIALALRDEVRDLEAAGIAAIQIDEPAFREGLPLRAGDVAVYLEWAARVFRVSASGVRNDTQIHTHMCYSEFNDILPAIASM 658          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_RALPJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia pickettii (strain 12J) GN=metE PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 1.718e-59
Identity = 109/160 (68.12%), Postives = 128/160 (80.00%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L G+AFTANGWVQSYGSRCVKPP+IYGDV RP+AMTV WS  AQS+T++PMKGMLTGPVT+L WSFVR+DQPR +T  QIALA++DEV DLE AGI  IQIDE A REGLPLR S+   YL+WA  +FR++  GV++ TQIHTHMCYS F  +   I  M
Sbjct:  502 LWGYAFTANGWVQSYGSRCVKPPVIYGDVYRPEAMTVEWSKYAQSLTSKPMKGMLTGPVTMLQWSFVRDDQPREQTALQIALALRDEVCDLEAAGIAAIQIDEPAFREGLPLRASDVPTYLEWAARAFRVSASGVRNDTQIHTHMCYSEFNDILPAIASM 661          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_CAUCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Caulobacter crescentus GN=metE PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 1.718e-59
Identity = 110/160 (68.75%), Postives = 123/160 (76.88%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L+GFAFT +GWVQSYGSRCV+PPI++GDVSRP  MTV W   AQ +T RPMKGMLTGPVTILNWSFVR+D PR   C QIALAI+DEV DLE  G  +IQIDEAALREGLPLR+ +   YLDWAV SFR+   GV D TQIHTHMCYS F  +   I  M
Sbjct:  522 LAGFAFTQSGWVQSYGSRCVRPPILFGDVSRPAPMTVDWWRYAQGLTRRPMKGMLTGPVTILNWSFVRDDLPRETACRQIALAIRDEVVDLEATGAAIIQIDEAALREGLPLRRGDWDAYLDWAVESFRLAASGVADATQIHTHMCYSEFNDIIAAIGAM 681          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_CYTH3 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=metE PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 2.930e-59
Identity = 107/160 (66.88%), Postives = 126/160 (78.75%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L G+ F+ NGWVQSYGSRCVKPPIIYGD+ R + MTV W++LAQS+T + MKGMLTGPVTIL WSFVR+DQPR +TC QIA AI+DEV DLE AGI +IQIDE A+REGLPLR+     YL+WAV  FRI+  GV+D TQIHTHMCYS F  +  +I  M
Sbjct:  515 LKGYVFSENGWVQSYGSRCVKPPIIYGDIERTEPMTVAWTTLAQSLTKKYMKGMLTGPVTILQWSFVRDDQPRRDTCMQIAFAIRDEVVDLEAAGIKIIQIDEPAIREGLPLRRENWETYLNWAVECFRISASGVKDETQIHTHMCYSEFNDIIKNIAAM 674          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_CHRSD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=metE PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 2.930e-59
Identity = 108/153 (70.59%), Postives = 123/153 (80.39%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTL 460
            L GFAFT  GWVQSYGSRCVKPP+I+GDVSRP  MTV WS  AQS+T +PMKGMLTGPVTIL WSFVR+DQPR  TC QIAL+++DEV DLE AGI +IQIDE ALREGLPLR+ E   YLDWAV SF+++    +D TQIHTHMCYS F  +
Sbjct:  504 LDGFAFTRFGWVQSYGSRCVKPPVIFGDVSRPGPMTVRWSEYAQSLTDKPMKGMLTGPVTILQWSFVRDDQPRDATCRQIALSLRDEVADLEAAGIKIIQIDEPALREGLPLRQGEWQEYLDWAVKSFKLSAAVARDETQIHTHMCYSEFNDI 656          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_NITEU (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Nitrosomonas europaea GN=metE PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 3.827e-59
Identity = 107/150 (71.33%), Postives = 122/150 (81.33%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF 451
            L G+AFT NGWVQSYGSRCVKPPI+YGDV RP+AMTV W   AQS T +P+KGMLTGPVT+L WSFVR+DQPR  T  Q+ALAI+DEV DLE AGI +IQIDE A REGLPLRK +   YLDWAV +FR+ + GV+D TQIHTHMCYS F
Sbjct:  500 LWGYAFTENGWVQSYGSRCVKPPILYGDVYRPEAMTVEWIKYAQSQTGKPVKGMLTGPVTMLMWSFVRDDQPRSTTALQLALAIRDEVADLENAGIGMIQIDEPAFREGLPLRKQDWKSYLDWAVKAFRVASSGVKDETQIHTHMCYSEF 649          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_CHRVO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Chromobacterium violaceum GN=metE PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 4.998e-59
Identity = 107/150 (71.33%), Postives = 124/150 (82.67%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF 451
            L+GFAFTA GWVQSYGSRCVKPPII+GDV+RPK MTV W+  AQS+TA+P+KGMLTGPVTIL WSFVR+D PR E C QIALA+ DEV DLE AGI VIQIDE A+REGLPL+++    YL WA  +FR+++ GV D TQIHTHMCYS F
Sbjct:  500 LAGFAFTAGGWVQSYGSRCVKPPIIFGDVARPKPMTVDWARYAQSLTAKPVKGMLTGPVTILQWSFVRDDLPRREVCRQIALALNDEVLDLEAAGIRVIQIDEPAIREGLPLKRAGRDVYLAWAGEAFRLSSRGVDDATQIHTHMCYSEF 649          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_METCA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Methylococcus capsulatus GN=metE PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 6.528e-59
Identity = 105/150 (70.00%), Postives = 123/150 (82.00%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF 451
            L+G+AFT +GWVQSYGSRCVKPPIIYGDV+RP+ MTV W   AQS+T +P+KGMLTGPVT+L WSF R+DQPR  T  QIALAI+DEV DLE AG+  IQIDE A REGLPL+ ++ A YLDWAV +FR+ +CGV D TQIHTHMCYS F
Sbjct:  499 LAGYAFTKHGWVQSYGSRCVKPPIIYGDVARPEPMTVEWIGYAQSLTKKPVKGMLTGPVTMLQWSFARDDQPRAVTALQIALAIRDEVADLEAAGVAAIQIDEPAFREGLPLKAADRADYLDWAVKAFRLASCGVADDTQIHTHMCYSEF 648          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_DICDI (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Dictyostelium discoideum GN=metE PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 6.528e-59
Identity = 106/160 (66.25%), Postives = 129/160 (80.62%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L+GF FT NGWVQSYGSRCVKPPIIYGDV+RP  MT+ +++ AQ++T +PMKGMLTGPVTIL WSFVR+DQPR ETC+QI LAI+DEV DLE  GI  IQIDE A+REGLPLR S+   YL WA+ SF +++ GV+D+TQIH+HMCYS+F  +   I  M
Sbjct:  565 LAGFVFTQNGWVQSYGSRCVKPPIIYGDVNRPVPMTLEYTTFAQTLTTKPMKGMLTGPVTILQWSFVRDDQPRSETCFQIGLAIRDEVTDLENKGIACIQIDEPAIREGLPLRLSDWNQYLKWAIDSFLLSSTGVKDSTQIHSHMCYSDFNDIFESIQRM 724          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_BRAJA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bradyrhizobium japonicum GN=metE PE=3 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 8.525e-59
Identity = 107/153 (69.93%), Postives = 124/153 (81.05%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTL 460
            L+GFAFT NGWVQSYGSRCV+PPI++GDV RPK +TV W   AQS+T++PMK MLTGPVTILNWSFVR+D PR E C Q+ALA++DEV DLE AG  +IQIDEAALREGLPLR+S+   YLDWA   FRI + GV D TQIHTHMCYS F  +
Sbjct:  520 LAGFAFTRNGWVQSYGSRCVRPPILFGDVVRPKPITVEWWRYAQSLTSKPMKAMLTGPVTILNWSFVRDDIPRSEVCRQLALAMRDEVRDLENAGAAMIQIDEAALREGLPLRRSDWKAYLDWAGDCFRICSSGVTDQTQIHTHMCYSEFNDI 672          
The following BLAST results are available for this feature:
BLAST of FC920677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
METE_RALSO1.718e-5968.135-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RALPJ1.718e-5968.135-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CAUCR1.718e-5968.755-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CYTH32.930e-5966.885-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CHRSD2.930e-5970.595-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NITEU3.827e-5971.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CHRVO4.998e-5971.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_METCA6.528e-5970.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_DICDI6.528e-5966.255-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BRAJA8.525e-5969.935-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC32011F03EF RVDevelop1 Citrus clementina cDNA clone C32011F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920677 ID=FC920677; Name=FC920677; organism=Citrus clementina; type=EST; length=489bp
ATTATCAGGTTTCGCCTTCACTGCCAATGGGTGGGTGCAATCCTATGGAT
CTCGCTGTGTGAAGCCACCCATCATCTATGGTGATGTGAGCCGTCCCAAG
GCTATGACCGTCTTCTGGTCCTCCTTGGCTCAGAGCATGACAGCTCGCCC
AATGAAAGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGGTCCTTTG
TTAGAAATGACCAGCCCAGACATGAAACCTGCTACCAGATTGCTTTGGCC
ATCAAGGACGAAGTCGAGGATCTTGAGAAGGCAGGCATTAACGTTATTCA
AATTGATGAGGCTGCCTTGAGGGAAGGATTGCCTCTTAGGAAATCTGAGC
ATGCTTTCTACTTGGACTGGGCAGTCCACTCCTTCAGAATCACCAACTGT
GGCGTCCAGGACACTACCCAGATCCACACCCACATGTGCTACTCCAACTT
CACGACATTATCCACTCATATCGACATGATGCTGATGTG
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