FC920677

Overview
NameFC920677
Unique NameFC920677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15279 contig Ccv1_Contig15279:575..1063. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_BIFA0 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=metE PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 7.979e-57
Identity = 108/161 (67.08%), Postives = 127/161 (78.88%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSE-HAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L+GF FT N WVQSYG+RCVKPPII+GDVSR + +TV WSS AQS TA+PMKGMLTGPVTILNWS+ R D    E   Q+ALAI+DEV DLEKAGI +IQIDEAALRE LPLR+S+ H  YLDWA+ +FR+ +  VQ +TQIHTHMCYS F  + + ID M
Sbjct:  509 LNGFLFTKNAWVQSYGTRCVKPPIIWGDVSRAQPITVAWSSYAQSRTAKPMKGMLTGPVTILNWSWPREDITHEEQTKQLALAIRDEVLDLEKAGIRIIQIDEAALREKLPLRESDWHREYLDWAIPAFRLVHSAVQPSTQIHTHMCYSEFNDIISDIDAM 669          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_SHEON (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Shewanella oneidensis GN=metE PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 2.322e-56
Identity = 103/150 (68.67%), Postives = 120/150 (80.00%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF 451
            L G  FT NGWVQSYGSRCVKPP+IYGDVSRPKAMTV W+  AQS+T +P+KGMLTGPVTIL+WSF R D  R     Q+ALAI+DEV DL+ AGI +IQIDE A REGLPL++SE   YLDWAV++F+++  GV D TQIHTHMCYS F
Sbjct:  503 LEGVGFTKNGWVQSYGSRCVKPPLIYGDVSRPKAMTVDWAVFAQSLTDKPVKGMLTGPVTILHWSFAREDISRDTIATQLALAIRDEVVDLQHAGIGIIQIDEPAFREGLPLKQSEWQAYLDWAVNAFKLSAAGVVDETQIHTHMCYSEF 652          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_RHILO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhizobium loti GN=metE PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 3.032e-56
Identity = 104/150 (69.33%), Postives = 119/150 (79.33%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF 451
            L GFAFT +GWVQSYGSR V+PPII GDVSR   MT+ W   AQS+T +P+KGMLTGPVTILNWSFVR+D PR   C Q+ALAI+DEV DLEKAG  +IQIDEAALREGLPLR+++   YLDWAV  FR+ +  V D TQIHTHMCYS F
Sbjct:  517 LRGFAFTQHGWVQSYGSRFVRPPIIIGDVSRQNPMTLHWWRYAQSLTPKPVKGMLTGPVTILNWSFVRDDLPRSAVCRQVALAIRDEVSDLEKAGAKMIQIDEAALREGLPLREADWQAYLDWAVECFRLASTAVGDATQIHTHMCYSEF 666          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_DESVM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=metE PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 3.960e-56
Identity = 104/157 (66.24%), Postives = 124/157 (78.98%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHI 472
            L GF  TANGWVQSYG+RCVKPP++YGDV+RP  MTV W + AQS+T +P+KGMLTGPVTI  WSFVR+D PR     Q+ALAI+DEV DLE AGI VIQIDE ALREGLPLR++ HA YLD AV +FR+ + GV+D TQIHTHMCY +F  +  H+
Sbjct:  524 LRGFCITANGWVQSYGTRCVKPPLLYGDVARPGPMTVRWITHAQSLTQKPVKGMLTGPVTIACWSFVRDDVPRPVVFRQLALAIRDEVADLEAAGIGVIQIDEPALREGLPLRRAAHAAYLDAAVGAFRLASSGVRDATQIHTHMCYCDFHDIIDHV 680          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_MYCTU (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mycobacterium tuberculosis GN=metE PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 6.755e-56
Identity = 102/150 (68.00%), Postives = 122/150 (81.33%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF 451
            L+GF  T NGWVQSYGSRCV+PPI+YGDVSRP+AMTV W + AQS+T +P+KGMLTGPVTIL WSFVR+DQP  +T  Q+ALAI+DE  DL+ AGI VIQ+DE ALRE LPLR+++ A YL WAV +FR+   GV D TQIHTH+CYS F
Sbjct:  504 LAGFFATQNGWVQSYGSRCVRPPILYGDVSRPRAMTVEWITYAQSLTDKPVKGMLTGPVTILAWSFVRDDQPLADTANQVALAIRDETVDLQSAGIAVIQVDEPALRELLPLRRADQAEYLRWAVGAFRLATSGVSDATQIHTHLCYSEF 653          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_MYCTA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=metE PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 6.755e-56
Identity = 102/150 (68.00%), Postives = 122/150 (81.33%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF 451
            L+GF  T NGWVQSYGSRCV+PPI+YGDVSRP+AMTV W + AQS+T +P+KGMLTGPVTIL WSFVR+DQP  +T  Q+ALAI+DE  DL+ AGI VIQ+DE ALRE LPLR+++ A YL WAV +FR+   GV D TQIHTH+CYS F
Sbjct:  504 LAGFFATQNGWVQSYGSRCVRPPILYGDVSRPRAMTVEWITYAQSLTDKPVKGMLTGPVTILAWSFVRDDQPLADTANQVALAIRDETVDLQSAGIAVIQVDEPALRELLPLRRADQAEYLRWAVGAFRLATSGVSDATQIHTHLCYSEF 653          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_MYCBP (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=metE PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 6.755e-56
Identity = 102/150 (68.00%), Postives = 122/150 (81.33%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF 451
            L+GF  T NGWVQSYGSRCV+PPI+YGDVSRP+AMTV W + AQS+T +P+KGMLTGPVTIL WSFVR+DQP  +T  Q+ALAI+DE  DL+ AGI VIQ+DE ALRE LPLR+++ A YL WAV +FR+   GV D TQIHTH+CYS F
Sbjct:  504 LAGFFATQNGWVQSYGSRCVRPPILYGDVSRPRAMTVEWITYAQSLTDKPVKGMLTGPVTILAWSFVRDDQPLADTANQVALAIRDETVDLQSAGIAVIQVDEPALRELLPLRRADQAEYLRWAVGAFRLATSGVSDATQIHTHLCYSEF 653          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_MYCBO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mycobacterium bovis GN=metE PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 6.755e-56
Identity = 102/150 (68.00%), Postives = 122/150 (81.33%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNF 451
            L+GF  T NGWVQSYGSRCV+PPI+YGDVSRP+AMTV W + AQS+T +P+KGMLTGPVTIL WSFVR+DQP  +T  Q+ALAI+DE  DL+ AGI VIQ+DE ALRE LPLR+++ A YL WAV +FR+   GV D TQIHTH+CYS F
Sbjct:  504 LAGFFATQNGWVQSYGSRCVRPPILYGDVSRPRAMTVEWITYAQSLTDKPVKGMLTGPVTILAWSFVRDDQPLADTANQVALAIRDETVDLQSAGIAVIQVDEPALRELLPLRRADQAEYLRWAVGAFRLATSGVSDATQIHTHLCYSEF 653          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_SALRD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salinibacter ruber (strain DSM 13855) GN=metE PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 1.965e-55
Identity = 103/153 (67.32%), Postives = 116/153 (75.82%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTL 460
            L GF FT NGWVQSYG+RCV+PPII GDVSRP+ MT  W S A   T  P+KGMLTGPVT+L WSFVR+DQ R ETC QIALAI+DEV DLE  GI  IQIDE A REGLPLR+ +   YLDWAV  FR+ + GV+D TQIHTHMCYS F  +
Sbjct:  511 LDGFLFTENGWVQSYGTRCVRPPIIAGDVSRPEPMTTRWLSYANDQTDTPVKGMLTGPVTMLQWSFVRDDQSRAETCRQIALAIRDEVLDLEDVGIQAIQIDEPAFREGLPLREHQWDDYLDWAVECFRLASSGVRDETQIHTHMCYSEFNDI 663          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_ACIF5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=metE PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 1.965e-55
Identity = 105/160 (65.62%), Postives = 120/160 (75.00%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L+GFAFT +GWVQSYGSR VKPP+I+GDVSRP  MTV WS  AQS+T RPMKGMLTGPVTIL WSFVR+DQPR  T  QIALAI+DEV DL  AGI +IQIDE A REGLPL++ +   YL+WA  +FRI+     D  QIHTHMCYS F  +   I  M
Sbjct:  527 LAGFAFTRHGWVQSYGSRYVKPPLIFGDVSRPTPMTVAWSKYAQSLTQRPMKGMLTGPVTILQWSFVRDDQPRERTALQIALAIRDEVRDLIDAGIGIIQIDEPAYREGLPLKRKDWGHYLEWASRAFRISAQIAPDDVQIHTHMCYSEFNDILPAIAAM 686          
The following BLAST results are available for this feature:
BLAST of FC920677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
METE_BIFA07.979e-5767.085-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SHEON2.322e-5668.675-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RHILO3.032e-5669.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_DESVM3.960e-5666.245-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MYCTU6.755e-5668.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MYCTA6.755e-5668.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MYCBP6.755e-5668.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MYCBO6.755e-5668.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SALRD1.965e-5567.325-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ACIF51.965e-5565.635-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC32011F03EF RVDevelop1 Citrus clementina cDNA clone C32011F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920677 ID=FC920677; Name=FC920677; organism=Citrus clementina; type=EST; length=489bp
ATTATCAGGTTTCGCCTTCACTGCCAATGGGTGGGTGCAATCCTATGGAT
CTCGCTGTGTGAAGCCACCCATCATCTATGGTGATGTGAGCCGTCCCAAG
GCTATGACCGTCTTCTGGTCCTCCTTGGCTCAGAGCATGACAGCTCGCCC
AATGAAAGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGGTCCTTTG
TTAGAAATGACCAGCCCAGACATGAAACCTGCTACCAGATTGCTTTGGCC
ATCAAGGACGAAGTCGAGGATCTTGAGAAGGCAGGCATTAACGTTATTCA
AATTGATGAGGCTGCCTTGAGGGAAGGATTGCCTCTTAGGAAATCTGAGC
ATGCTTTCTACTTGGACTGGGCAGTCCACTCCTTCAGAATCACCAACTGT
GGCGTCCAGGACACTACCCAGATCCACACCCACATGTGCTACTCCAACTT
CACGACATTATCCACTCATATCGACATGATGCTGATGTG
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