FC920678

Overview
NameFC920678
Unique NameFC920678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig641 contig Ccv1_Contig641:76..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920678 vs. ExPASy Swiss-Prot
Match: PSB4_ENCCU (Probable proteasome subunit beta type-4 OS=Encephalitozoon cuniculi GN=PRE4 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.269e-28
Identity = 72/190 (37.89%), Postives = 107/190 (56.32%), Query Frame = 2
Query:  146 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK----------NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDE---WHENLSYEDGVKLLEKCMRVLLYRDRSA 676
            +VTGT+VV+ +Y+DGI+M AD  GSYG   +   V+RI  +G  +LLG SGEISD Q L++ L  L   DN       + PK  H  + R++Y+ R+K  PL  S+ +GG+             +K LG V+ +G  +    V TG G +L  P LR+      E ++ E+ + L+E+ MR+L YRD +A
Sbjct:   13 FVTGTTVVSFRYRDGIIMGADTRGSYGRLAKLSGVQRIFKVGDQTLLGMSGEISDMQYLVKTLTILTQEDN-----RRIDPKGYHKMIQRILYSARSKISPLNLSVCVGGLNAASDGDRRTHTREKMLGCVNHLGNFYFSDVVCTGIGGYLVLPFLRNRVEGREEEIAREEAIGLVEEAMRILCYRDCNA 197          
BLAST of FC920678 vs. ExPASy Swiss-Prot
Match: PSB4_PIG (Proteasome subunit beta type-4 (Fragment) OS=Sus scrofa GN=PSMB4 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.522e-27
Identity = 55/113 (48.67%), Postives = 83/113 (73.45%), Query Frame = 2
Query:  122 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNS 460
            PI RTQ P VTGTSV+ +K++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  PK +HS+LTR MYNRR K +PLW +
Sbjct:   42 PITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYNRRFKMNPLWTT 154          
BLAST of FC920678 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15
Identity = 56/172 (32.56%), Postives = 88/172 (51.16%), Query Frame = 2
Query:  155 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 667
            GT+ V L  K+G+++AAD   S G+ I  K+V +I  I +H  +  +G++ D   L+R L  E  LY +    G  +  K L + L  ++    +K+ P     ++GG     + L  V M+G   ED++ A G G   A  IL  E+ E +S  DG+KL  K + V + RD
Sbjct:   10 GTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKS--TVGKEMSVKALATLLANIL--NGSKYFPYLGWFLVGGYDEKPR-LFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLAVKAINVAIKRD 176          
BLAST of FC920678 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 55/172 (31.98%), Postives = 86/172 (50.00%), Query Frame = 2
Query:  155 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 667
            GT+ V +  KDG+++AAD   S G+ I  ++V +I  I +H  +  +G++ D   L+R L  E  LY +    G  +  K L + L  +M     K+ P     ++GG     K L  V M+G   ED +   G G   A  IL  E+ +NL+ E+G+KL  K +   + RD
Sbjct:   10 GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYS--QSGKRMSVKALATLLANIMNGA--KYFPYLAWFLVGGYDEKPK-LYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRD 176          
BLAST of FC920678 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.588e-11
Identity = 50/172 (29.07%), Postives = 83/172 (48.26%), Query Frame = 2
Query:  155 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 667
            GT+ V +   DG+++AAD   S G+ +  K+V +I  I +H  +  +G++ D   L+R L  E  LY      G  +  K L + L  ++   R      W   ++GG     + L  V M+G   ED +VA G G   A  +L  E+ E+L   +G+K+  + +   + RD
Sbjct:   10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLY--YAQSGKRMSVKALATLLANMLNGARMLPYLAW--FLVGGFDEKPR-LYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRD 176          
BLAST of FC920678 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 50/181 (27.62%), Postives = 94/181 (51.93%), Query Frame = 2
Query:  146 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD-ELILYDNMWDDGNSLGPKELHSYLTRVMYN--RRNKFDPLWNSLVLGGV-KNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSA 676
            Y+ GT+ V +   DGI++A++   + G  I  K+ +++  I     +  +G + D Q+L+R +  E  LY    D+  ++        +T +M N   RN++ P+   L++GGV KNG     + +M G   E    ATG G+ +A  +L D++ EN++ ++G+ L  + +     RD ++
Sbjct:    6 YLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTI------KGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSAS 180          
The following BLAST results are available for this feature:
BLAST of FC920678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSB4_ENCCU9.269e-2837.89Probable proteasome subunit beta type-4 OS=Encepha... [more]
PSB4_PIG3.522e-2748.67Proteasome subunit beta type-4 (Fragment) OS=Sus s... [more]
PSMB_PYRFU3.093e-1532.56Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]
PSMB_PYRHO1.535e-1431.98Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]
PSMB_PYRAB1.588e-1129.07Proteasome subunit beta OS=Pyrococcus abyssi GN=ps... [more]
PSMB_METTE3.539e-1127.62Proteasome subunit beta OS=Methanosarcina thermoph... [more]

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Properties
Property NameValue
Genbank descriptionC32011F04EF RVDevelop1 Citrus clementina cDNA clone C32011F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920678 ID=FC920678; Name=FC920678; organism=Citrus clementina; type=EST; length=677bp
GAAGTTAGATCGTGAAGCCTCTCCTGATCAGCTTTGCTATTTACTGAGAA
AGTGAATCAAATCTCAAAACGAATTAATGGAATCGATCCAAGCCAAACAA
GGACTTGTCGGCCCTAACGACCCCATTCAAAGAACCCAGTTACCATATGT
GACTGGTACATCTGTTGTTGCGCTGAAGTACAAAGATGGCATATTAATGG
CTGCTGACATGGGAGGTTCCTATGGGTCAACAATCCGATACAAGAGTGTG
GAACGGATTAAACCTATTGGAAAGCATTCTCTACTGGGTGCCAGTGGAGA
AATAAGTGATTTTCAGGAGCTTTTGCGTAATCTTGATGAGCTTATACTTT
ATGACAATATGTGGGATGATGGGAACTCTTTGGGGCCAAAAGAGTTGCAC
AGCTATTTGACCAGGGTCATGTATAACAGGCGTAACAAGTTTGATCCATT
GTGGAACTCTCTTGTGCTTGGTGGAGTGAAAAATGGACAGAAATATCTTG
GCATGGTATCAATGATAGGAGTGAACTTTGAGGACAGCCATGTTGCAACT
GGGTTTGGGAATCATCTTGCAAGGCCAATTCTTCGTGATGAATGGCATGA
AAACTTGAGTTATGAAGATGGCGTTAAGTTGCTGGAAAAGTGCATGCGTG
TGCTCCTGTATCGTGATAGATCTGCCG
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