FC920679

Overview
NameFC920679
Unique NameFC920679
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL5_TOXCI (60S ribosomal protein L5 OS=Toxoptera citricida GN=RpL5 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.026e-66
Identity = 127/211 (60.19%), Postives = 155/211 (73.46%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPT-ENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            K  K+K YFKRYQVK+KRRREGKTDY AR RLI QDKNKY+TPKYR +VRF+N+DIT Q+  + I GD ++ +AY+HELP+YG++VGLTNYAAAYCTGLL+ARR+LK L +D  YEG  EA GE+Y VEP  E    FR  LDVGL+KT+TG RVF            IPHS KRF G+  ++K+  AE HRK+I   HVA YMR L E++
Sbjct:    5 KVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYDTPKYRLIVRFSNRDITCQVAHSRIEGDKIVCAAYSHELPKYGVKVGLTNYAAAYCTGLLVARRLLKKLGLDRLYEGLKEANGEEYYVEPADEGPNAFRCNLDVGLMKTSTGARVFGAMKGAVDGGFNIPHSVKRFPGYDAEAKEYSAETHRKHILGLHVAEYMRKLEEED 215          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL5_MOUSE (60S ribosomal protein L5 OS=Mus musculus GN=Rpl5 PE=1 SV=3)

HSP 1 Score: 251.136 bits (640), Expect = 3.953e-66
Identity = 125/211 (59.24%), Postives = 154/211 (72.99%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            K  K+KAYFKRYQV+++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DI  QI  A I GD+++ +AYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE  G +Y+VE  + +   F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+ +AEVHRK+I   +VA YMR LME++
Sbjct:    5 KVVKNKAYFKRYQVRFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGGEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEED 215          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL5_BOMMO (60S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.953e-66
Identity = 123/211 (58.29%), Postives = 156/211 (73.93%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            K  K+K YFKRYQVK+KRRREGKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+T Q+  + I GD ++ +AY+HELPRYG++VGLTNYAAAY TGLLLARR+L+ L +D  Y G  + TG++Y+VEP +N    FR  LDVGL +TTTG RVF            +PHS KRF G+  +SK+ +AEVHR +I+  HVA YMR+L +D+
Sbjct:    5 KVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGLLLARRLLQRLGLDTLYTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGRRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDD 215          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL5_ANOGA (60S ribosomal protein L5 OS=Anopheles gambiae GN=RpL5 PE=2 SV=3)

HSP 1 Score: 251.136 bits (640), Expect = 3.953e-66
Identity = 125/211 (59.24%), Postives = 155/211 (73.46%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPT-ENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            K  K+K YFKRYQV+++RRREGKTDY AR RLI QDKNKYNTPK+R +VR +N+DIT QI  A I GD ++ +AY+HELPRYG++VGLTNYAAAYCTGLL+ARR+L+ L +D  Y G  + TGE+Y VEP  E    FR  LDVGL +TTTG RVF            IPHS KRF G+S ++K  +AE+HR +I+  HVA YMRTL E++
Sbjct:    5 KVVKNKQYFKRYQVRFRRRREGKTDYYARKRLIFQDKNKYNTPKFRLIVRLSNRDITCQIAYARIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYAGCTDVTGEEYLVEPVDEGPAAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEMHRDHIFGLHVANYMRTLEEED 215          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL5_DUNSA (60S ribosomal protein L5 OS=Dunaliella salina GN=RPL5 PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.162e-66
Identity = 122/211 (57.82%), Postives = 157/211 (74.41%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            K  K+  YF RYQVKY+RRR+GKTDYRAR+RL+ QDKNKYNT KYR VVRF+NK++T QI+ ++I GD+V+A+AY+ ELP YGL+VGLTNY+AAYC GLL+ARR+L  L +   Y+G  E  GEDY+VEP E+  +PF  LLD GL +T+TG++VF            IPH+EKRF G++   K+LD EV +KYIY GHVA Y  T+ E+E
Sbjct:    5 KVVKTSPYFSRYQVKYRRRRQGKTDYRARLRLVRQDKNKYNTHKYRLVVRFSNKNVTCQIVYSTIQGDVVMAAAYSKELPNYGLKVGLTNYSAAYCVGLLVARRILTKLNLADTYKGQEEPDGEDYNVEPVEDGPKPFYCLLDTGLKRTSTGSKVFAAMKGALDGGLDIPHNEKRFVGYA--DKKLDTEVLQKYIYGGHVAEYQETMQEEE 213          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL5_LYSTE (60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.346e-65
Identity = 121/211 (57.35%), Postives = 154/211 (72.99%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEP-TENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            K  K+K YFKR+QVKYKRRREGKTDY AR RL  QDK+KYNTPKYR +VR +NKDIT QI  + I GD ++ +AY+HELP+YG++VGLTNYAAAYCTGLLLARR+LK L++D  Y G  E  G++Y+VE   +    FR  LD GL++TTTG R+F            IPHS KRF G+  +SK  +A+VHR++I+  H+A YM+TL E+E
Sbjct:    5 KVVKNKQYFKRFQVKYKRRREGKTDYYARKRLTVQDKSKYNTPKYRLIVRLSNKDITCQIAYSRIEGDRIVCAAYSHELPKYGIKVGLTNYAAAYCTGLLLARRLLKQLKLDTLYTGTTEVDGDEYNVEEHDDGPGAFRCYLDTGLMRTTTGARIFGAMKGAVDGGLNIPHSTKRFPGYDNESKSFNADVHRQHIFAHHIANYMKTLEENE 215          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL5_NEUCR (60S ribosomal protein L5 OS=Neurospora crassa GN=rpl-5 PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.699e-64
Identity = 127/214 (59.35%), Postives = 150/214 (70.09%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTE----NRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            K  K+ AY+ R+Q KYKRRREGKTDY AR RLI Q KNKYN PKYR VVRFTN+DI  QI+S+ I GD V ASAY+HEL  YG+E GLTN+AAAY TGLLLARRVLK L +D  ++G  EA GE    E  E     RRPF+A LDVGL +T+TG RVF            IPHSE RF G+  +S++LDAE  +KYI+ GHVA YM TL +D+
Sbjct:    5 KLVKNSAYYSRFQTKYKRRREGKTDYYARKRLITQAKNKYNAPKYRLVVRFTNRDIILQIVSSEITGDKVFASAYSHELKAYGIEHGLTNWAAAYATGLLLARRVLKKLGLDETFKGVEEADGEYKLTEAAETDDGERRPFKAFLDVGLARTSTGARVFGAMKGASDGGIFIPHSENRFPGYDMESEELDAETLKKYIFGGHVAEYMETLADDD 218          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL5_THEPA (60S ribosomal protein L5 OS=Theileria parva GN=RPL5 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.714e-62
Identity = 122/211 (57.82%), Postives = 154/211 (72.99%), Query Frame = 2
Query:   65 KSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSK---QLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            K+KAYF+R+QVK++RRREGKTDY AR RL+ QDKNKY++PKYR VVR TNK +  QI+S+++ GD V ASA + EL  YG++VGLTNYAAAYCTGLLLARR+L  L++D+++ G VEA GE Y VE  +N RRPF+ALLDVG+   TTGNRVF            +PHSEKRF G+S D +     DA+ HR  I+  HVA YM  L E++
Sbjct:    8 KNKAYFRRFQVKFRRRREGKTDYYARRRLVAQDKNKYDSPKYRLVVRLTNKRVICQIVSSTLVGDKVHASADSSELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLKLDSQFVGKVEADGELYHVEEEDNERRPFKALLDVGIKNVTTGNRVFGALKGACDGGLHVPHSEKRFPGYSVDDENNGSYDAQAHRDRIFGTHVANYMEYLKEED 218          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL5_THEAN (60S ribosomal protein L5 OS=Theileria annulata GN=RPL5 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.714e-62
Identity = 122/211 (57.82%), Postives = 154/211 (72.99%), Query Frame = 2
Query:   65 KSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQ---LDAEVHRKYIYCGHVAAYMRTLMEDE 685
            K+KAYF+R+QVK++RRREGKTDY AR RL+ QDKNKY++PKYR VVR TNK +  QI+S+++ GD V ASA + EL  YG++VGLTNYAAAYCTGLLLARR+L  L++D+++ G VEA GE Y VE  +N RRPF+ALLDVG+   TTGNRVF            +PHSEKRF G+S D +     DA+ HR  I+  HVA YM  L E++
Sbjct:    8 KNKAYFRRFQVKFRRRREGKTDYYARRRLVAQDKNKYDSPKYRLVVRLTNKRVICQIVSSTLVGDKVHASADSSELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLKLDSQFVGKVEADGELYHVEEDDNERRPFKALLDVGIKNVTTGNRVFGALKGACDGGLHVPHSEKRFPGYSVDDENNGTYDAQAHRDRIFGTHVANYMEYLKEED 218          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL5_EIMTE (60S ribosomal protein L5 OS=Eimeria tenella GN=RPL5 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.530e-61
Identity = 123/215 (57.21%), Postives = 152/215 (70.70%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEP-TENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLD----AEVHRKYIYCGHVAAYMRTLMEDE 685
            KA K+KAYFKR+QVKY+RRREGKTDY AR RLI QDKNKYN PKYRFVVR TN  +  Q++ A++ GD ++ SA + EL RYG++VGLTNY+AAY TGLLLARR+LK   +  E++G  + +GE+Y +E  +E RRPF+ +LDVG+V TT GNRVF            IPHS KRF GF+K     D     EVHR  IY  HVA YMRTL E++
Sbjct:    5 KAIKNKAYFKRFQVKYRRRREGKTDYAARRRLILQDKNKYNAPKYRFVVRVTNSRVLCQVMYATLQGDRLVCSADSQELTRYGIKVGLTNYSAAYATGLLLARRLLKQKGLADEFKGLEKPSGEEYHIEEVSEERRPFKCVLDVGIVATTVGNRVFGAMKGACDGGLHIPHSNKRFPGFTKGEDGADDSYNPEVHRARIYGLHVAEYMRTLKEED 219          
The following BLAST results are available for this feature:
BLAST of FC920679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RL5_TOXCI3.026e-6660.1960S ribosomal protein L5 OS=Toxoptera citricida GN... [more]
RL5_MOUSE3.953e-6659.2460S ribosomal protein L5 OS=Mus musculus GN=Rpl5 P... [more]
RL5_BOMMO3.953e-6658.2960S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE... [more]
RL5_ANOGA3.953e-6659.2460S ribosomal protein L5 OS=Anopheles gambiae GN=R... [more]
RL5_DUNSA5.162e-6657.8260S ribosomal protein L5 OS=Dunaliella salina GN=R... [more]
RL5_LYSTE3.346e-6557.3560S ribosomal protein L5 OS=Lysiphlebus testaceipe... [more]
RL5_NEUCR3.699e-6459.3560S ribosomal protein L5 OS=Neurospora crassa GN=r... [more]
RL5_THEPA7.714e-6257.8260S ribosomal protein L5 OS=Theileria parva GN=RPL... [more]
RL5_THEAN7.714e-6257.8260S ribosomal protein L5 OS=Theileria annulata GN=... [more]
RL5_EIMTE6.530e-6157.2160S ribosomal protein L5 OS=Eimeria tenella GN=RPL... [more]

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Properties
Property NameValue
Genbank descriptionC32011F05EF RVDevelop1 Citrus clementina cDNA clone C32011F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920679 ID=FC920679; Name=FC920679; organism=Citrus clementina; type=EST; length=686bp
AAACTTCTCGAACTCTGCTGCTTCTACACTTTGAGCTTCAGCAATGGCCT
TTGCCAAAGCTCAAAAGTCAAAAGCTTACTTTAAGCGATATCAAGTTAAG
TACAAGAGAAGGCGAGAGGGAAAGACTGACTATCGGGCTAGGATTCGCCT
GATCAACCAAGATAAAAACAAGTACAACACGCCAAAGTATCGGTTTGTTG
TGCGATTCACCAACAAAGATATCACTGCACAAATTATATCTGCCAGCATA
GCCGGGGATATAGTCCTTGCATCTGCTTATGCCCATGAGCTTCCCCGTTA
TGGTCTTGAGGTGGGCCTCACTAATTATGCAGCAGCTTATTGCACTGGAC
TCCTCTTGGCCCGCCGAGTCCTGAAAATGCTTGAGATGGATGCTGAGTAT
GAGGGGCACGTTGAGGCAACAGGAGAGGACTATTCAGTTGAGCCAACTGA
GAACAGGAGGCCTTTCCGTGCCCTGCTTGATGTTGGTCTTGTGAAAACAA
CTACTGGTAACCGTGTCTTTGGCGCTCTTAAGGGTGCATTGGATGGTGGA
CTTGATATCCCTCACAGTGAGAAGAGATTTGCTGGATTCAGTAAGGATAG
TAAGCAACTTGACGCTGAAGTTCACCGTAAATACATCTATTGTGGTCATG
TCGCTGCCTACATGAGGACTTTGATGGAAGATGAGC
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