FC920679

Overview
NameFC920679
Unique NameFC920679
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14135 contig Ccv1_Contig14135:50..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL18_METM5 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 61/199 (30.65%), Postives = 91/199 (45.73%), Query Frame = 2
Query:   86 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 682
            +++V ++RRREGKTD+R R+ L+   K        R V R +  ++TAQ++S    GD+VL SA+  EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH ++  A    + ++L+           HV  Y  +L ED
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVTAQLMSYDEKGDVVLVSAHTKELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----EEERLNGT---------HVKNYAESLKED 158          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL18_METMJ (50S ribosomal protein L18P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 54/162 (33.33%), Postives = 73/162 (45.06%), Query Frame = 2
Query:   86 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSE 571
            RY V ++RR EGKTDY  R+ L++       TP  R VVR TN+ I  Q++   + GD  L +AY+ EL  YG E    +  AAY TG+L A                V+A    Y            A+LD+GL +   G RVF            +P+ E
Sbjct:    6 RYFVPFRRRHEGKTDYYKRMSLLSS-----GTP--RMVVRKTNRQIIVQLVVPEVEGDSTLVAAYSAELAGYGYEGSTASTPAAYLTGMLFA----------------VKALNAGYG----------EAILDIGLARAKPGARVFAALKGAVDAGLDVPYGE 134          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL18_METLZ (50S ribosomal protein L18P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 55/145 (37.93%), Postives = 71/145 (48.97%), Query Frame = 2
Query:   86 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVF 520
            RY V+++RRREG+TDY  R RLI   +N       R VVR TN+ I  Q+I+A + GD  L    + EL  +G +  L N  AAY TG+L A R  K     A YEG                      + D+GL   +TG RVF
Sbjct:    6 RYFVQFRRRREGRTDYYQRQRLIVSGRN-------RMVVRKTNRHIIIQLIAAQMDGDYTLVHVNSRELVNFGYKGYLGNTPAAYLTGMLFAVRAQK-----AGYEG---------------------GIADIGLQVASTGARVF 117          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL18_METPE (50S ribosomal protein L18P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 56/163 (34.36%), Postives = 77/163 (47.24%), Query Frame = 2
Query:   86 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEK 574
            RY V ++RRREGKTDY  R +LI  ++        R VVR TN+ I  Q+I A + GD  L +A + EL  YG +   +N  AAY TG+L A                V+A   D+            A+LD+GL + T G +VF            +PH E+
Sbjct:    6 RYFVPFRRRREGKTDYYKRGKLIVAEQP-------RMVVRKTNRHIIVQMIVAEMEGDKTLVTANSAELLDYGYKGSTSNTPAAYLTGMLFA----------------VKALNADHPA----------AILDIGLNRATYGAKVFAALKGAVEAGLDVPHGEE 135          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL18_METM7 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 60/199 (30.15%), Postives = 91/199 (45.73%), Query Frame = 2
Query:   86 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 682
            +++V ++RRREGKTD+R R+ L+   K        R V R +  ++ AQ+++    GD+VL SA++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH ++  A    D ++L+           HV  Y  +L ED
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLNGT---------HVKNYAESLKED 158          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL18_METM6 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 60/199 (30.15%), Postives = 91/199 (45.73%), Query Frame = 2
Query:   86 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 682
            +++V ++RRREGKTD+R R+ L+   K        R V R +  ++ AQ+++    GD+VL SA++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH ++  A    D ++L+           HV  Y  +L ED
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLNGT---------HVKNYAESLKED 158          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL18_META3 (50S ribosomal protein L18P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 56/171 (32.75%), Postives = 82/171 (47.95%), Query Frame = 2
Query:   74 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAG 586
            A+  +Y+V ++RRREGKT++R R++L+        TP  R V R +  +I AQI+     GD ++ SA++ E+ + G +    N  AAY TGLLL ++ LK        EG+ E                  A+LD+GL   T G  V             IPHSE+   G
Sbjct:    2 AHGAKYRVPFRRRREGKTNFRLRLKLLLS-----RTP--RLVARKSLNNIVAQIVEYDEVGDKIVVSAHSKEIVKLGYKGHCGNVPAAYLTGLLLGKKALK--------EGNEE------------------AILDLGLNSATKGAAVLAILKGAVDAGMDIPHSEEILPG 139          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL18_NATPD (50S ribosomal protein L18P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 53/170 (31.18%), Postives = 75/170 (44.12%), Query Frame = 2
Query:   86 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSK 595
            RY V  +RRRE +T+Y  R+RL+   K        R V R +N    AQ++     GD  +ASA + +L  +G E    N  AAY TGLL  +R ++               G D             A+LD+GL   T GN+VF            +PH+E  FA + +
Sbjct:    6 RYTVPMRRRREARTNYHQRLRLLKSGKP-------RLVARKSNNQTKAQLVVTGPQGDETVASATSADLEAFGWEAPTGNLPAAYLTGLLAGKRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFAVQEGVIDAGLEVPHNEDVFADWQR 142          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL18_METBU (50S ribosomal protein L18P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 49/165 (29.70%), Postives = 77/165 (46.67%), Query Frame = 2
Query:   86 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF 580
            RY+V ++RRREG+TDY  R+RL+   ++       R VVR + + +  Q+++    GD+ L+SA + EL +YG E    N  AAY TGLL   + L                 E Y             +LD+G+  ++ G+RV+            +PH+   F
Sbjct:    6 RYKVAFRRRREGRTDYHQRLRLLLSRED-------RVVVRKSARHMQIQLVAPDANGDVTLSSAISKELAKYGYEGSTGNTTAAYLTGLLFGYKTL----------------AEGYE----------SGVLDIGIQASSAGSRVYAALKGVVDSGLDVPHNSSVF 137          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL5_RABIT (60S ribosomal protein L5 (Fragments) OS=Oryctolagus cuniculus GN=RPL5 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKY 190
            K  K+KAYFKRYQVK++RRREGKTDY AR RL+ QDKNKYNTP +
Sbjct:    4 KVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPAH 48          
The following BLAST results are available for this feature:
BLAST of FC920679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RL18_METM57.822e-1430.6550S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_METMJ1.022e-1333.3350S ribosomal protein L18P OS=Methanoculleus maris... [more]
RL18_METLZ1.022e-1337.9350S ribosomal protein L18P OS=Methanocorpusculum l... [more]
RL18_METPE1.334e-1334.3650S ribosomal protein L18P OS=Methanosphaerula pal... [more]
RL18_METM71.743e-1330.1550S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_METM61.743e-1330.1550S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_META31.743e-1332.7550S ribosomal protein L18P OS=Methanococcus aeolic... [more]
RL18_NATPD2.972e-1331.1850S ribosomal protein L18P OS=Natronomonas pharaon... [more]
RL18_METBU2.972e-1329.7050S ribosomal protein L18P OS=Methanococcoides bur... [more]
RL5_RABIT5.070e-1375.5660S ribosomal protein L5 (Fragments) OS=Oryctolagu... [more]

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Properties
Property NameValue
Genbank descriptionC32011F05EF RVDevelop1 Citrus clementina cDNA clone C32011F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920679 ID=FC920679; Name=FC920679; organism=Citrus clementina; type=EST; length=686bp
AAACTTCTCGAACTCTGCTGCTTCTACACTTTGAGCTTCAGCAATGGCCT
TTGCCAAAGCTCAAAAGTCAAAAGCTTACTTTAAGCGATATCAAGTTAAG
TACAAGAGAAGGCGAGAGGGAAAGACTGACTATCGGGCTAGGATTCGCCT
GATCAACCAAGATAAAAACAAGTACAACACGCCAAAGTATCGGTTTGTTG
TGCGATTCACCAACAAAGATATCACTGCACAAATTATATCTGCCAGCATA
GCCGGGGATATAGTCCTTGCATCTGCTTATGCCCATGAGCTTCCCCGTTA
TGGTCTTGAGGTGGGCCTCACTAATTATGCAGCAGCTTATTGCACTGGAC
TCCTCTTGGCCCGCCGAGTCCTGAAAATGCTTGAGATGGATGCTGAGTAT
GAGGGGCACGTTGAGGCAACAGGAGAGGACTATTCAGTTGAGCCAACTGA
GAACAGGAGGCCTTTCCGTGCCCTGCTTGATGTTGGTCTTGTGAAAACAA
CTACTGGTAACCGTGTCTTTGGCGCTCTTAAGGGTGCATTGGATGGTGGA
CTTGATATCCCTCACAGTGAGAAGAGATTTGCTGGATTCAGTAAGGATAG
TAAGCAACTTGACGCTGAAGTTCACCGTAAATACATCTATTGTGGTCATG
TCGCTGCCTACATGAGGACTTTGATGGAAGATGAGC
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