FC920679

Overview
NameFC920679
Unique NameFC920679
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14135 contig Ccv1_Contig14135:50..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL18_METKA (50S ribosomal protein L18P OS=Methanopyrus kandleri GN=rpl18p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 54/164 (32.93%), Postives = 73/164 (44.51%), Query Frame = 2 
Query:   86 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELP-RYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEK 574
            RY+V ++RRREGKT+Y  R  LI  D         R V R T     AQI+  +  GD+ LASA++ EL  ++G +    N  AAY TG L   R L+                          R   RA++D+GL +   G+RVF            IPH E+
Sbjct:    9 RYRVPFRRRREGKTNYYKRRELIKADAP-------RLVARKTLNHNIAQIVDFAPHGDVTLASAHSIELRNKFGWKGHCGNTPAAYLTGYLCGLRALE--------------------------RGIERAVIDIGLHRPVRGSRVFAMLKGALDAGMDIPHGEE 139
The following BLAST results are available for this feature:
BLAST of FC920679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RL18_METKA8.094e-1132.9350S ribosomal protein L18P OS=Methanopyrus kandler... [more]

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Properties
Property NameValue
Genbank descriptionC32011F05EF RVDevelop1 Citrus clementina cDNA clone C32011F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920679 ID=FC920679; Name=FC920679; organism=Citrus clementina; type=EST; length=686bp
AAACTTCTCGAACTCTGCTGCTTCTACACTTTGAGCTTCAGCAATGGCCT
TTGCCAAAGCTCAAAAGTCAAAAGCTTACTTTAAGCGATATCAAGTTAAG
TACAAGAGAAGGCGAGAGGGAAAGACTGACTATCGGGCTAGGATTCGCCT
GATCAACCAAGATAAAAACAAGTACAACACGCCAAAGTATCGGTTTGTTG
TGCGATTCACCAACAAAGATATCACTGCACAAATTATATCTGCCAGCATA
GCCGGGGATATAGTCCTTGCATCTGCTTATGCCCATGAGCTTCCCCGTTA
TGGTCTTGAGGTGGGCCTCACTAATTATGCAGCAGCTTATTGCACTGGAC
TCCTCTTGGCCCGCCGAGTCCTGAAAATGCTTGAGATGGATGCTGAGTAT
GAGGGGCACGTTGAGGCAACAGGAGAGGACTATTCAGTTGAGCCAACTGA
GAACAGGAGGCCTTTCCGTGCCCTGCTTGATGTTGGTCTTGTGAAAACAA
CTACTGGTAACCGTGTCTTTGGCGCTCTTAAGGGTGCATTGGATGGTGGA
CTTGATATCCCTCACAGTGAGAAGAGATTTGCTGGATTCAGTAAGGATAG
TAAGCAACTTGACGCTGAAGTTCACCGTAAATACATCTATTGTGGTCATG
TCGCTGCCTACATGAGGACTTTGATGGAAGATGAGC
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