FC920680

Overview
NameFC920680
Unique NameFC920680
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13706 contig Ccv1_Contig13706:54..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: IF2G_PYRHO (Translation initiation factor 2 subunit gamma OS=Pyrococcus horikoshii GN=eif2g PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.298e-31
Identity = 71/145 (48.97%), Postives = 97/145 (66.90%), Query Frame = 3
Query:  243 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIM 677
            +RQA +NIG +GHV HGK+T+ KA++GV T     EL R ITIK+G+A+A+I +C       P C +   S     P+C   G E    + +R VSF+D PGH+ LM TML GA++MDGA+L+IAANE CP+P T EHL A++I+
Sbjct:    7 TRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRC-------PNCGRYSTS-----PVCPYCGHET---EFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII 136          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: IF2G_HALSA (Translation initiation factor 2 subunit gamma OS=Halobacterium salinarium GN=eif2g PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.348e-31
Identity = 68/144 (47.22%), Postives = 95/144 (65.97%), Query Frame = 3
Query:  246 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIM 677
            RQ  +NIG +GHV HGK+T+V+A+SG  T +   E++R I+I+LGYA+A + +C D  C  P CY    +  E +   ++           R VSFVD PGH+ LMATML+GAA+MDGA+L++ ANE  PQP T EHL A++I+
Sbjct:    6 RQPEVNIGLVGHVDHGKTTLVRALSGEWTDQHSEEMKRGISIRLGYADATLRRCPD--CDEPECYTVAETCPEHDTATEIE----------RTVSFVDAPGHETLMATMLSGAALMDGAVLVVGANEPVPQPQTEEHLMALDII 137          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: IF2G_HALS3 (Translation initiation factor 2 subunit gamma OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=eIF2G PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.348e-31
Identity = 68/144 (47.22%), Postives = 95/144 (65.97%), Query Frame = 3
Query:  246 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIM 677
            RQ  +NIG +GHV HGK+T+V+A+SG  T +   E++R I+I+LGYA+A + +C D  C  P CY    +  E +   ++           R VSFVD PGH+ LMATML+GAA+MDGA+L++ ANE  PQP T EHL A++I+
Sbjct:    6 RQPEVNIGLVGHVDHGKTTLVRALSGEWTDQHSEEMKRGISIRLGYADATLRRCPD--CDEPECYTVAETCPEHDTATEIE----------RTVSFVDAPGHETLMATMLSGAALMDGAVLVVGANEPVPQPQTEEHLMALDII 137          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: IF2G_METKA (Translation initiation factor 2 subunit gamma OS=Methanopyrus kandleri GN=eif2g PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.124e-30
Identity = 74/144 (51.39%), Postives = 92/144 (63.89%), Query Frame = 3
Query:  246 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIM 677
            +QA +NIG +GHV HGK+T+ KA+SGV T     E  R I+I+LGYA+  +      RCP    Y    S +E  P C          + LR VSFVD PGH+ LMATML+GAAIMD A+L+IAANE CPQP T EHL A+EI+
Sbjct:    7 QQAEMNIGMVGHVDHGKTTLTKALSGVWTDTHSEETRRGISIRLGYADTVL-----TRCPECDTY----SVEEKCPEC------GAETEWLRRVSFVDSPGHETLMATMLSGAAIMDAAILVIAANEPCPQPQTREHLMALEII 135          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: IF2G_THEAC (Translation initiation factor 2 subunit gamma OS=Thermoplasma acidophilum GN=eif2g PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.364e-29
Identity = 69/143 (48.25%), Postives = 91/143 (63.64%), Query Frame = 3
Query:  249 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIM 677
            Q ++NIG +GHV HGKST+  A++G +T     E++R I+IKLGYA+  IY+C D                  N        ENC ++  R +S VD PGH+ LMATML+G+A+M+GALL+IAANE CPQP T EHL A+EIM
Sbjct:    9 QPSVNIGMVGHVDHGKSTLTLALTGTKTDTHSEEIKRGISIKLGYADTPIYRCYDS---------------SGNVHYTREKGENCDLE--RVISIVDAPGHETLMATMLSGSALMNGALLVIAANEHCPQPQTREHLTALEIM 134          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: IF2G_META3 (Translation initiation factor 2 subunit gamma OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=eIF2G PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.032e-29
Identity = 65/144 (45.14%), Postives = 95/144 (65.97%), Query Frame = 3
Query:  246 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIM 677
            +Q+ INIG +GHV HGK+++ + ++G  T     EL+R I+I+LGYA+ +I KC   +C  P  Y    S  +  P+C        + K+ R +SFVD PGH+ LMATML+GA++M+GA+L+IAA E CPQP T EHL A++ +
Sbjct:    5 KQSEINIGMVGHVDHGKTSLTRQLTGTWTDTHSEELKRGISIRLGYADCEIMKCP--KCGAPEAY----SVSKTCPVCGT------KTKMSRKISFVDAPGHETLMATMLSGASLMNGAILVIAATEKCPQPQTKEHLMALDAL 136          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: IF2G_PYRKO (Translation initiation factor 2 subunit gamma OS=Pyrococcus kodakaraensis GN=eif2g PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 69/144 (47.92%), Postives = 92/144 (63.89%), Query Frame = 3
Query:  246 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIM 677
            RQA +NIG +GHV HGK+T+ KA++G+ T     EL R ITIK+G+A+A+I KC       P C K        +P+C   G E    +  R VSF+D PGH+ LM TML GA++MDGA+L+IAANE    P T EHL A++I+
Sbjct:    8 RQAEVNIGMVGHVDHGKTTLTKALTGIWTDTHSEELRRGITIKIGFADAEIRKC-------PHCGK-----YSTSPVCPYCGHET---EFERRVSFIDAPGHEALMTTMLAGASLMDGAVLVIAANEGV-MPQTREHLMALQIV 135          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: IF2G_THEON (Translation initiation factor 2 subunit gamma OS=Thermococcus onnurineus (strain NA1) GN=eIF2G PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.297e-27
Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = 3
Query:  246 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIM 677
            RQA +NIG +GHV HGK+T+ KA++G+ T     EL R ITIK+G+A+A+I KC       P C +        +P+C   G E    +  R VSF+D PGH+ LM TML GA++MDGA+L+IAANE    P T EHL A++I+
Sbjct:    8 RQAEVNIGMVGHVDHGKTTLTKALTGIWTDTHSEELRRGITIKIGFADAEIRKC-------PSCGR-----YSTSPICPYCGHET---EFERRVSFIDAPGHEALMTTMLAGASLMDGAVLVIAANEGV-MPQTREHLMALQIV 135          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: SUV39_DROME (Histone-lysine N-methyltransferase Su(var)3-9 OS=Drosophila melanogaster GN=Su(var)3-9 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.774e-27
Identity = 64/78 (82.05%), Postives = 68/78 (87.18%), Query Frame = 3
Query:  171 KGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYK 404
            + L +QDLS LDV+KL PLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKL   + K  K
Sbjct:   12 RNLQKQDLSNLDVSKLTPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLERLSEKKIK 89          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: IF2G_HALMA (Translation initiation factor 2 subunit gamma OS=Haloarcula marismortui GN=eif2g PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 65/145 (44.83%), Postives = 92/145 (63.45%), Query Frame = 3
Query:  243 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIM 677
            ++Q  +NIG +GHV HGK+T+V+A+SG  T +   E++R I+I+LGYA+A   +C +   P       +         CD    +      LR VSFVD PGH+ LMATML+GAAIMDGA+L+I+A E  PQ  T EHL+A++I+
Sbjct:    4 NKQPEVNIGLVGHVDHGKTTLVQALSGEWTDQHSEEMKRGISIRLGYADATFRRCPEAEEPEAFTVDEH---------CDDHDVDTDH---LRTVSFVDAPGHETLMATMLSGAAIMDGAVLVISATEPVPQAQTEEHLSALDII 136          
The following BLAST results are available for this feature:
BLAST of FC920680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
IF2G_PYRHO3.298e-3148.97Translation initiation factor 2 subunit gamma OS=P... [more]
IF2G_HALSA7.348e-3147.22Translation initiation factor 2 subunit gamma OS=H... [more]
IF2G_HALS37.348e-3147.22Translation initiation factor 2 subunit gamma OS=H... [more]
IF2G_METKA8.124e-3051.39Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_THEAC2.364e-2948.25Translation initiation factor 2 subunit gamma OS=T... [more]
IF2G_META34.032e-2945.14Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_PYRKO9.931e-2847.92Translation initiation factor 2 subunit gamma OS=P... [more]
IF2G_THEON1.297e-2747.22Translation initiation factor 2 subunit gamma OS=T... [more]
SUV39_DROME3.774e-2782.05Histone-lysine N-methyltransferase Su(var)3-9 OS=D... [more]
IF2G_HALMA8.407e-2744.83Translation initiation factor 2 subunit gamma OS=H... [more]

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Properties
Property NameValue
Genbank descriptionC32011F07EF RVDevelop1 Citrus clementina cDNA clone C32011F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920680 ID=FC920680; Name=FC920680; organism=Citrus clementina; type=EST; length=701bp
GCTCTCACAATCAATATAGCGGCAAACCTCAGTCAAATCTCGGTCTCGCA
GTCGTTCTCCGGCCGCAACTTGCTCTGCATTCAATCAGTTTTACGGGCTT
GAACATTACTAGTGGCAATACAGACAATAAGGAGAGGGGTATTTTCAAAG
AAACAGGCAAGATGTCACGGAAGGGTTTGATGGAACAGGACTTGAGTAAG
TTGGATGTAACTAAGTTGCATCCTCTTTCTCCTGAAGTCATTTCTCGCCA
GGCTACTATTAATATTGGAACTATCGGTCATGTGGCCCATGGCAAATCAA
CTGTTGTGAAGGCAATATCTGGTGTTCAGACTGTTCGTTTTAAGAATGAA
TTAGAGCGTAACATTACTATCAAGCTTGGATATGCAAATGCCAAGATATA
CAAATGTGAAGATGATCGTTGCCCACGACCAATGTGCTATAAGGCATATG
GAAGTGGGAAAGAAGATAATCCTCTGTGCGATGTGCCTGGTTTTGAGAAC
TGCAGGATGAAATTGCTTAGGCATGTCTCTTTTGTTGATTGCCCGGGTCA
TGATATTCTTATGGCTACAATGCTTAATGGAGCAGCAATTATGGATGGAG
CATTGCTTCTCATAGCAGCCAATGAAAGTTGCCCGCAACCACCAACATCG
GAGCACTTGGCAGCTGTTGAAATCATGCGTCTCCACATATAATATTCTTC
A
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