FC920680

Overview
NameFC920680
Unique NameFC920680
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13706 contig Ccv1_Contig13706:54..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: IF2G_NATPD (Translation initiation factor 2 subunit gamma OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=eIF2G PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 67/145 (46.21%), Postives = 91/145 (62.76%), Query Frame = 3
Query:  246 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCED-DRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIM 677
            RQ  +NIG +GHV HGK+T+V+++SG  T +   E++R I+I+LGYA+A   +C + D   R    +    G E   L              R VSFVD PGH+ LMATML+GAAIMDGA+L+IAANE  P+  T EHL A++I+
Sbjct:    6 RQPEVNIGLVGHVDHGKTTLVESLSGEWTDQHSEEMKRGISIRLGYADATFRECPELDEPDRYTVEETCPDGSESEHL--------------RTVSFVDAPGHETLMATMLSGAAIMDGAVLVIAANEPVPRAQTEEHLMALDII 136          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: IF2G_HALLT (Translation initiation factor 2 subunit gamma OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=eIF2G PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26
Identity = 64/149 (42.95%), Postives = 92/149 (61.74%), Query Frame = 3
Query:  240 ISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCY---KAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIM 677
            ++ Q  +NIG +GHV HGK+T+V+A+SG  T +   E++R I+I+LGYA+A   +C     P   CY   +    G E  P+              R VSFVD PGH+ LMATML+GA+IMDGA+L+++A E  PQ  T EHL A++++
Sbjct:    4 VNTQPEVNIGLVGHVDHGKTTLVQALSGSWTDQHSEEMKRGISIRLGYADATFRRCPGVDAPE--CYTVDEECEDGSESEPI--------------RTVSFVDAPGHETLMATMLSGASIMDGAVLVVSATEDVPQAQTEEHLMALDLI 136          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: IF2G_HALWD (Translation initiation factor 2 subunit gamma OS=Haloquadratum walsbyi (strain DSM 16790) GN=eIF2G PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 64/145 (44.14%), Postives = 91/145 (62.76%), Query Frame = 3
Query:  243 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIM 677
            ++Q  +NIG +GHV HGK+T+V+A+SG  T +   E++R I+I+LGYA+A      +   P    Y    +G +  P            + LR VSFVD PGH+ LMATML+GAAIMDGA+L+++A E  PQ  T EHL A++I+
Sbjct:    5 TQQPEVNIGLVGHVDHGKTTLVQALSGSWTDQHSEEMKRGISIRLGYADATFRMISNINPPEG--YTVDETGPDGEPT-----------ETLRTVSFVDAPGHETLMATMLSGAAIMDGAVLVVSATEDVPQAQTEEHLMALDII 136          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: SUV39_DROPS (Histone-lysine N-methyltransferase Su(var)3-9 OS=Drosophila pseudoobscura pseudoobscura GN=Su(var)3-9 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.586e-25
Identity = 61/78 (78.21%), Postives = 66/78 (84.62%), Query Frame = 3
Query:  171 KGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYK 404
            + L +QDL  L+V+ L PLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKL   + K  K
Sbjct:   12 RNLQKQDLRNLEVSNLTPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLERLSEKKIK 89          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: SELB_MOOTH (Selenocysteine-specific elongation factor OS=Moorella thermoacetica GN=selB PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.290e-13
Identity = 49/142 (34.51%), Postives = 70/142 (49.30%), Query Frame = 3
Query:  258 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIMRL 683
            I +GT GHV HGK+ +VKA++GV T R K E ER I+I+LG+A                            PL    G         R +  VD PGH+  +  ML G   MD  +L++AA+E    P T EHLA ++++++
Sbjct:    4 IVVGTAGHVDHGKTVLVKALTGVDTDRLKEEKERGISIELGFA----------------------------PLTLPSG---------RQLGLVDVPGHERFIRQMLAGVGGMDLVMLVVAADEGV-MPQTREHLAIIDLLQI 107          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: EFTU_MYCHJ (Elongation factor Tu OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=tuf PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 51/134 (38.06%), Postives = 63/134 (47.01%), Query Frame = 3
Query:  258 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHL 659
            INIGTIGHV HGK+T+  AIS              +  K G A AK Y   D          A    K      +    E    K  RH + VDCPGH   +  M+ GAA MDGA+L++AA +  P P T EH+
Sbjct:   19 INIGTIGHVDHGKTTLTAAIS-------------TVLAKRGLAEAKDYASID----------AAPEEKARGITINTAHIEYSTDK--RHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDG-PMPQTREHI 126          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: EFTU_MYCH7 (Elongation factor Tu OS=Mycoplasma hyopneumoniae (strain 7448) GN=tuf PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 51/134 (38.06%), Postives = 63/134 (47.01%), Query Frame = 3
Query:  258 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHL 659
            INIGTIGHV HGK+T+  AIS              +  K G A AK Y   D          A    K      +    E    K  RH + VDCPGH   +  M+ GAA MDGA+L++AA +  P P T EH+
Sbjct:   19 INIGTIGHVDHGKTTLTAAIS-------------TVLAKKGLAEAKDYASID----------AAPEEKARGITINTAHIEYSTDK--RHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDG-PMPQTREHI 126          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: EFTU_MYCH2 (Elongation factor Tu OS=Mycoplasma hyopneumoniae (strain 232) GN=tuf PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 51/134 (38.06%), Postives = 63/134 (47.01%), Query Frame = 3
Query:  258 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHL 659
            INIGTIGHV HGK+T+  AIS              +  K G A AK Y   D          A    K      +    E    K  RH + VDCPGH   +  M+ GAA MDGA+L++AA +  P P T EH+
Sbjct:   19 INIGTIGHVDHGKTTLTAAIS-------------TVLAKKGLAEAKDYASID----------AAPEEKARGITINTAHIEYSTDK--RHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDG-PMPQTREHI 126          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: EFTU_FLAFE (Elongation factor Tu OS=Flavobacterium ferrugineum GN=tuf PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 51/134 (38.06%), Postives = 66/134 (49.25%), Query Frame = 3
Query:  258 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHL 659
            +NIGTIGHV HGK+T+  AI+             +I  K G A AK Y  E D  P           KE     +    E       RH + VDCPGH   +  M+ GAA MDGA+L++AA++  P P T EH+
Sbjct:   13 VNIGTIGHVDHGKTTLTAAIT-------------DILSKKGLAQAKKYD-EIDGAPEE---------KERGITINTAHVEYETAN--RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAASDG-PMPQTKEHI 120          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: EFTU_TOXGO (Elongation factor Tu, apicoplast OS=Toxoplasma gondii GN=tufA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 52/149 (34.90%), Postives = 72/149 (48.32%), Query Frame = 3
Query:  225 LSPEVISRQAT-INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYK---CEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHL 659
            ++ E+  +Q   INIGTIGHV HGK+T+  AI+ V        L +N   KL     K YK   C  +   R +  K      E                 +RH + +DCPGH   +  M+ GAA MDGA+L+++A +  P P T EHL
Sbjct:    1 MAKEIFKKQKPHINIGTIGHVDHGKTTLTAAITYV--------LAKNNQAKL-----KTYKEIDCAPEEIARGITIKTSHIEYET---------------AVRHYAHIDCPGHADYIKNMITGAAQMDGAILVVSAVDG-PMPQTKEHL 120          
The following BLAST results are available for this feature:
BLAST of FC920680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
IF2G_NATPD1.098e-2646.21Translation initiation factor 2 subunit gamma OS=N... [more]
IF2G_HALLT1.873e-2642.95Translation initiation factor 2 subunit gamma OS=H... [more]
IF2G_HALWD9.295e-2644.14Translation initiation factor 2 subunit gamma OS=H... [more]
SUV39_DROPS1.586e-2578.21Histone-lysine N-methyltransferase Su(var)3-9 OS=D... [more]
SELB_MOOTH5.290e-1334.51Selenocysteine-specific elongation factor OS=Moore... [more]
EFTU_MYCHJ7.639e-1238.06Elongation factor Tu OS=Mycoplasma hyopneumoniae (... [more]
EFTU_MYCH77.639e-1238.06Elongation factor Tu OS=Mycoplasma hyopneumoniae (... [more]
EFTU_MYCH27.639e-1238.06Elongation factor Tu OS=Mycoplasma hyopneumoniae (... [more]
EFTU_FLAFE9.977e-1238.06Elongation factor Tu OS=Flavobacterium ferrugineum... [more]
EFTU_TOXGO2.223e-1134.90Elongation factor Tu, apicoplast OS=Toxoplasma gon... [more]

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Properties
Property NameValue
Genbank descriptionC32011F07EF RVDevelop1 Citrus clementina cDNA clone C32011F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920680 ID=FC920680; Name=FC920680; organism=Citrus clementina; type=EST; length=701bp
GCTCTCACAATCAATATAGCGGCAAACCTCAGTCAAATCTCGGTCTCGCA
GTCGTTCTCCGGCCGCAACTTGCTCTGCATTCAATCAGTTTTACGGGCTT
GAACATTACTAGTGGCAATACAGACAATAAGGAGAGGGGTATTTTCAAAG
AAACAGGCAAGATGTCACGGAAGGGTTTGATGGAACAGGACTTGAGTAAG
TTGGATGTAACTAAGTTGCATCCTCTTTCTCCTGAAGTCATTTCTCGCCA
GGCTACTATTAATATTGGAACTATCGGTCATGTGGCCCATGGCAAATCAA
CTGTTGTGAAGGCAATATCTGGTGTTCAGACTGTTCGTTTTAAGAATGAA
TTAGAGCGTAACATTACTATCAAGCTTGGATATGCAAATGCCAAGATATA
CAAATGTGAAGATGATCGTTGCCCACGACCAATGTGCTATAAGGCATATG
GAAGTGGGAAAGAAGATAATCCTCTGTGCGATGTGCCTGGTTTTGAGAAC
TGCAGGATGAAATTGCTTAGGCATGTCTCTTTTGTTGATTGCCCGGGTCA
TGATATTCTTATGGCTACAATGCTTAATGGAGCAGCAATTATGGATGGAG
CATTGCTTCTCATAGCAGCCAATGAAAGTTGCCCGCAACCACCAACATCG
GAGCACTTGGCAGCTGTTGAAATCATGCGTCTCCACATATAATATTCTTC
A
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