FC920688

Overview
NameFC920688
Unique NameFC920688
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6308 contig Ccv1_Contig6308:679..1391. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920688 vs. ExPASy Swiss-Prot
Match: NIPA1_HUMAN (Magnesium transporter NIPA1 OS=Homo sapiens GN=NIPA1 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.844e-38
Identity = 83/219 (37.90%), Postives = 132/219 (60.27%), Query Frame = 2
Query:    2 TPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLE---GLNQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTRE 649
            TPLGAL +   ++LA ++L EKL  +G LGCLL   GS ++++H+P  ES+ +  E+    T P F+ Y+  V+ + L+LI + AP +G TNI++YI ICS++GS TV S K IG+A +  L       +A C+   + A++  + +I Q  Y+N AL+ F+++V   IYY +FT+  + ASAI+F+++S           CGF TV  G  ++   +E
Sbjct:   96 TPLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVVLIIHSPKSESVTTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISICSLLGSFTVPSTKGIGLAAQDILHNNPSSQRALCLCLVLLAVLGCS-IIVQFRYINKALECFDSSVFGAIYYVVFTTLVLLASAILFREWSNVGLVDFLGMACGFTTVSVGIVLIQVFKE 313          
BLAST of FC920688 vs. ExPASy Swiss-Prot
Match: NPAL2_MOUSE (NIPA-like protein 2 OS=Mus musculus GN=Nipal2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.269e-18
Identity = 58/217 (26.73%), Postives = 107/217 (49.31%), Query Frame = 2
Query:    5 PLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTREPD 655
            PLG +S+  SA+++   L E L+   +LG  L   G+ ++V  AP      S + +        FL+YV   + V  +L LY   R G  +I++ + + +++ SLTV+SVKA+   I L++ G  Q      +I  ++ +   + Q+ +LN A + +    V P+ +  FT+  I A  I ++++ G +  ++   L G      G  ++   RE +
Sbjct:  118 PLGCMSVTGSAIISVLFLKENLRASDLLGMTLAFAGTYLLVNFAPNITQAISARTVQYYFVGWQFLVYVILEILVFCIL-LYFHKRKGMKHIVVLLTLVALLASLTVISVKAVSGMITLSVTGKMQLTYAIFYIMLVIMIASCVFQVKFLNQATELYTMTTVVPVNHVFFTTSAIIAGIIFYQEFLGAAFLTVFIYLFGCFLSFLGVFLVTRNREKE 333          
BLAST of FC920688 vs. ExPASy Swiss-Prot
Match: NPAL2_HUMAN (NIPA-like protein 2 OS=Homo sapiens GN=NIPAL2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 56/217 (25.81%), Postives = 104/217 (47.93%), Query Frame = 2
Query:    5 PLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTREPD 655
            PLG +S+  SA+++   L + L+   +LG  L   G+ ++V  AP      S + +        FL+YV   + +  +L LY   R G  +++I + + +++ SLTV+SVKA+   I  ++    Q      +I  ++ +   + Q+ +LN A   +NT  V P+ +  FT   I A  I ++++ G    ++   L G      G  ++   RE +
Sbjct:  118 PLGCVSVTGSAIISVTFLKDNLRASDLLGTTLAFAGTYLLVNFAPNITQAISARTVQYYLVGWQFLIYVILEILIFCIL-LYFYKRKGMKHMVILLTLVAILASLTVISVKAVSGMITFSVMDKMQLTYPIFYIMFIIMIASCVFQVKFLNQATKLYNTTTVVPVNHIFFTISAIIAGIIFYQEFLGAPFLTVFIYLFGCFLSFLGVFLVTRNREKE 333          
BLAST of FC920688 vs. ExPASy Swiss-Prot
Match: NPAL3_HUMAN (NIPA-like protein 3 OS=Homo sapiens GN=NIPAL3 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.815e-16
Identity = 54/227 (23.79%), Postives = 110/227 (48.46%), Query Frame = 2
Query:    5 PLGALSIIVSAVLAHFMLNEKLQK--------MGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTREPDTP 661
            PL A+S+I SA++    + EK +         +  +GC L VVG+ ++V  AP      + + +        FLLY+  V  +   L+LY        NI++ + + +++GS+TV++VKA+   + L+++G  Q      ++  +  +   + Q  +L+ A   +++++++ + Y + T+  I A AI + D+ G+    I     G +    G  ++   R+   P
Sbjct:  104 PLSAVSVIASAIIGIIFIKEKWKPKDFLRRYVLSFVGCGLAVVGTYLLVTFAPNSHEKMTGENVTRHLVSWPFLLYM-LVEIILFCLLLYFYKEKNANNIVVILLLVALLGSMTVVTVKAVAGMLVLSIQGNLQLDYPIFYVMFVCMVATAVYQAAFLSQASQMYDSSLIASVGYILSTTIAITAGAIFYLDFIGEDVLHICMFALGCLIAFLGVFLITRNRKKPIP 329          
BLAST of FC920688 vs. ExPASy Swiss-Prot
Match: NPAL3_PONAB (NIPA-like protein 3 OS=Pongo abelii GN=NIPAL3 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.901e-16
Identity = 54/227 (23.79%), Postives = 110/227 (48.46%), Query Frame = 2
Query:    5 PLGALSIIVSAVLAHFMLNEKLQK--------MGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTREPDTP 661
            PL A+S+I SA++    + EK +         +  +GC L VVG+ ++V  AP      + + +        FLLY+  V  +   L+LY        NI++ + + +++GS+TV++VKA+   + L+++G  Q      ++  +  +   + Q  +L+ A   +++++++ + Y + T+  I A AI + D+ G+    I     G +    G  ++   R+   P
Sbjct:  104 PLSAVSVIASAIIGIIFIKEKWKPKDFLRRYILSFVGCGLAVVGTYLLVTFAPNSREKMTGENVTRHLVSWPFLLYM-LVEIILFCLLLYFYKEKNANNIVVILLLVALLGSMTVVTVKAVAGMLVLSIQGNLQLDYPIFYVMFVCMVATAVYQAAFLSQASQMYDSSLIASVGYILSTTIAITAGAIFYLDFIGEDVLHICMFALGCLIAFLGVFLITRNRKKAIP 329          
BLAST of FC920688 vs. ExPASy Swiss-Prot
Match: NPAL3_MOUSE (NIPA-like protein 3 OS=Mus musculus GN=Nipal3 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.901e-16
Identity = 56/227 (24.67%), Postives = 111/227 (48.90%), Query Frame = 2
Query:    5 PLGALSIIVSAVLAHFMLNEKLQK--------MGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTREPDTP 661
            PL A+S+I SA++    + EK +         +  +GC L +VG+ ++V  AP      + + I        FLLY+  V  V   L+LY        +I++ + + +++GS+TV++VKA+   + L+++G  Q      ++  +  +   I Q  +L+ A   +++++++ + Y + T+  I A AI + D+ G+ A  I     G +    G  ++   R+   P
Sbjct:  108 PLSAVSVIASAIIGIIFIKEKWKPKDFVRRYVLSFVGCGLAIVGTYLLVTFAPNSHEKMTGENIARHLVSWPFLLYM-LVAIVLFCLLLYFYKERNANSIVVILLLVALLGSMTVVTVKAVSGMLVLSIQGNLQLDYPIFYVMFVCMVATAIYQATFLSEASQIYDSSLIASVGYILSTTAAITAGAIFYLDFLGEEALHICMFALGCLIAFLGVFLITRNRKKAIP 333          
The following BLAST results are available for this feature:
BLAST of FC920688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
NIPA1_HUMAN2.844e-3837.90Magnesium transporter NIPA1 OS=Homo sapiens GN=NIP... [more]
NPAL2_MOUSE4.269e-1826.73NIPA-like protein 2 OS=Mus musculus GN=Nipal2 PE=2... [more]
NPAL2_HUMAN3.995e-1625.81NIPA-like protein 2 OS=Homo sapiens GN=NIPAL2 PE=2... [more]
NPAL3_HUMAN6.815e-1623.79NIPA-like protein 3 OS=Homo sapiens GN=NIPAL3 PE=1... [more]
NPAL3_PONAB8.901e-1623.79NIPA-like protein 3 OS=Pongo abelii GN=NIPAL3 PE=2... [more]
NPAL3_MOUSE8.901e-1624.67NIPA-like protein 3 OS=Mus musculus GN=Nipal3 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC32011G07EF RVDevelop1 Citrus clementina cDNA clone C32011G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920688 ID=FC920688; Name=FC920688; organism=Citrus clementina; type=EST; length=713bp
GACTCCACTTGGTGCATTGAGTATCATCGTTAGTGCTGTTTTGGCACATT
TCATGTTGAATGAGAAATTACAGAAAATGGGAATGTTGGGTTGTCTTTTA
TGCGTAGTGGGCTCTACAATGATTGTGCTTCATGCTCCTCTAGAGGAGTC
TCTTAATTCGGTTCAAGAAATCTGGGTGTTAGCGACGCAACCCGCATTTC
TTTTGTATGTGGGCTCAGTGGTAGCCGTGGCACTAGTGTTGATATTGTAT
TGTGCTCCTCGATATGGCCAAACCAACATATTGATCTATATAGGAATTTG
CTCTGTGATTGGCTCATTGACAGTTATGAGTGTAAAAGCCATTGGCATTG
CAATAAAGCTGACACTAGAGGGCTTGAACCAAGCCAAGTGCATTGAGACA
TGGATTTTTGCGATGGTTGCACTTACCTGTGTTATCACTCAATTAAATTA
TCTAAACATGGCATTGGATACTTTCAACACAGCAGTTGTTTCTCCTATCT
ATTATGCCATGTTCACATCTTTTACTATTTTTGCCAGTGCAATAATGTTT
AAGGATTATTCTGGTCAAAGTGCAAGCAGCATAGCGTCAGAGCTCTGTGG
TTTTATCACCGTTTTATCTGGAACTTCTGTTTTGCACAGCACAAGAGAGC
CAGATACACCCTTGATTACAGATCTCTATACCCCGTTATCTCCCAAGTAT
CATGGTACATTCA
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