FC920699

Overview
NameFC920699
Unique NameFC920699
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length747
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920699 vs. ExPASy Swiss-Prot
Match: PR1A_HORVU (Pathogenesis-related protein 1A/1B OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.442e-27
Identity = 74/203 (36.45%), Postives = 94/203 (46.31%), Query Frame = 3
Query:  108 AAKFDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSIFTCPTGTDYKVVFCP 713
            AA F+I NNC  T+W A +P GGG +L  GQT +I    GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAE+ +   +  DF D+S IDGFN+ M+FS           C+                          D   C   +C P           P  Y +P D AT    C    +Y++ FCP
Sbjct:   20 AATFNIKNNCGSTIWPAGIPVGGGFELGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGQPPATLAEFTIGGGSTQDFYDISVIDGFNLAMDFS-----------CSTG------------------------DALQCRDPSCPP-----------PQAYQHPNDVAT--HACSGNNNYQITFCP 173          
BLAST of FC920699 vs. ExPASy Swiss-Prot
Match: TLP_WHEAT (Thaumatin-like protein PWIR2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.460e-27
Identity = 75/203 (36.95%), Postives = 93/203 (45.81%), Query Frame = 3
Query:  108 AAKFDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSIFTCPTGTDYKVVFCP 713
            AA F+I NNC  T+W A +P GGG  L  GQT +I    GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAEY +   +  DF D+S IDGFN+ M+FS           C+                          D   C   +C P           P  Y +P D AT    C    +Y++ FCP
Sbjct:   20 AATFNIKNNCGFTIWPAGIPVGGGFALGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGRPPATLAEYTIGGGSTQDFYDISVIDGFNLAMDFS-----------CSTG------------------------DALQCRDPSCPP-----------PQAYQHPNDVAT--HACSGNNNYQITFCP 173          
BLAST of FC920699 vs. ExPASy Swiss-Prot
Match: RST4_AVESA (Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa GN=RASTL-4 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.197e-27
Identity = 74/203 (36.45%), Postives = 98/203 (48.28%), Query Frame = 3
Query:  108 AAKFDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSIFTCPTGTDYKVVFCP 713
            AA F ITNNC  TVW AA+P GGG+QLD+GQTWT+    GT + RIW RT C F+  G G C+TGDC G L C   G  P TLAE+++    + D+ D+S ID +N+ M+FS           C+     +C +                                       CPD Y  P D  T   +C T ++Y++ FCP
Sbjct:   21 AATFTITNNCGYTVWPAAIPVGGGQQLDQGQTWTLNVPAGTNSGRIWGRTGCSFN-GGSGSCQTGDCAGALSCTLSG-QPATLAEFSIG--GEHDYYDISVIDVYNLAMDFS-----------CSTGDALQCRD-------------------------------------SSCPDAYHQPDDPKT--HSCNTNSNYQITFCP 169          
BLAST of FC920699 vs. ExPASy Swiss-Prot
Match: PRR3_JUNVI (Pathogenesis-related protein (Fragment) OS=Juniperus virginiana PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.083e-26
Identity = 53/85 (62.35%), Postives = 60/85 (70.59%), Query Frame = 3
Query:  108 AAKFDITNNCPDTVWAAAVPGGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEY 362
            A KFDI N C  TVWAA +PGGG++LD+GQTWT+    GT +AR W RT C FDASGKG C+TGDC   L C   GA P TLAEY
Sbjct:   19 AVKFDIKNQCGYTVWAAGLPGGGKRLDQGQTWTVNLAAGTASARFWGRTGCTFDASGKGSCQTGDCGRQLSCTVSGAVPATLAEY 103          
BLAST of FC920699 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.700e-25
Identity = 74/203 (36.45%), Postives = 93/203 (45.81%), Query Frame = 3
Query:  108 AAKFDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSIFTCPTGTDYKVVFCP 713
            AA F ITNNC  TVW A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDGFN+ M+FS           C+  +  +C +                                       CPD Y +P D AT    C   ++Y++ FCP
Sbjct:   21 AATFRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGFNLAMDFS-----------CSTGVALKCRDA-------------------------------------NCPDAYHHPNDVAT--HACNGNSNYQITFCP 169          
BLAST of FC920699 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.493e-24
Identity = 77/203 (37.93%), Postives = 96/203 (47.29%), Query Frame = 3
Query:  108 AAKFDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSIFTCPTGTDYKVVFCP 713
            AA F ITNNC  TVW A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDG+N+ M+FS           C+  +       LK                 C +SG              CPD Y +P D AT    C   ++Y++ FCP
Sbjct:   21 AATFRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGYNLAMDFS-----------CSTGV------ALK-----------------CRDSG--------------CPDAYHHPNDVAT--HACNGNSNYQITFCP 169          
BLAST of FC920699 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.493e-24
Identity = 73/203 (35.96%), Postives = 93/203 (45.81%), Query Frame = 3
Query:  108 AAKFDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSIFTCPTGTDYKVVFCP 713
            AA F ITNNC  TVW A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDG+N+ M+FS           C+  +  +C +                                       CPD Y +P D AT    C   ++Y++ FCP
Sbjct:   21 AATFRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGYNLAMDFS-----------CSTGVALKCRDA-------------------------------------NCPDAYHHPNDVAT--HACNGNSNYQITFCP 169          
The following BLAST results are available for this feature:
BLAST of FC920699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PR1A_HORVU1.442e-2736.45Pathogenesis-related protein 1A/1B OS=Hordeum vulg... [more]
TLP_WHEAT2.460e-2736.95Thaumatin-like protein PWIR2 OS=Triticum aestivum ... [more]
RST4_AVESA4.197e-2736.45Thaumatin-like pathogenesis-related protein 4 OS=A... [more]
PRR3_JUNVI2.083e-2662.35Pathogenesis-related protein (Fragment) OS=Juniper... [more]
RST1_AVESA6.700e-2536.45Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
RST3_AVESA1.493e-2437.93Thaumatin-like pathogenesis-related protein 3 OS=A... [more]
RST2_AVESA1.493e-2435.96Thaumatin-like pathogenesis-related protein 2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC32011H07EF RVDevelop1 Citrus clementina cDNA clone C32011H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920699 ID=FC920699; Name=FC920699; organism=Citrus clementina; type=EST; length=747bp
GAAACTTATCTATTTTCATATTCATTATCCTCTCCAAAATGAAGTTCGTT
AAAGCTCTTCCCATTCCTTCTGCTCTTCTTATTATCATTTCCATCACCCT
GACTCATGCTGCCAAATTCGATATCACAAACAATTGCCCCGACACCGTCT
GGGCCGCCGCTGTGCCCGGAGGCGGCAGGCAACTCGACAAGGGTCAAACA
TGGACCATCACCGCCGAGCCAGGCACAAAAGCAGCCCGCATTTGGGCTCG
AACCAAATGCCAGTTTGATGCTTCCGGCAAAGGCAAATGCGAGACCGGTG
ACTGTAACGGACTCCTCGAGTGCCAAGGCTACGGTGCAGCACCTAACACC
TTGGCCGAGTACGCGTTGAAGCAATTCAATGACATGGATTTCATTGACAT
GTCCAACATTGACGGATTCAATGTTCCCATGGAATTTAGCTCTGTCTCTC
CCTCATGCAACCGCGTGATCAAGTGCACTGCTAACATTCTTGGCGAGTGC
CCGAATGAATTGAAGGTTCCTGGAGGATGTAACGGGCCGTGCCCCGTGTT
CAAGACCGACGAGTACTGTTGCAATTCAGGCAACTGCGGACCTACAGGTT
TCTCCAAGTTTTTCAAGGATAGGTGCCCGGATGTTTACAGTTACCCTAAG
GATGACGCTACCAGCATATTTACTTGCCCGACTGGGACAGACTACAAGGT
TGTATTCTGCCCCTGAAGCATTTTTTTTCAGGGGTAGAAATGGAATA
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