FC920701

Overview
NameFC920701
Unique NameFC920701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14179 contig Ccv1_Contig14179:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_SYNFM (50S ribosomal protein L4 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  447 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +P  + FN ++   G + L+  VF VP+R  ++H VV +QLAKR+ GT  TK  S+V+G  KKPWRQKGTGRAR
Sbjct:    1 MPTVDIFNTNRDVVGQLELSDAVFAVPLRPHVLHEVVLYQLAKRRAGTVKTKGRSDVAGGGKKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_PROAC (50S ribosomal protein L4 OS=Propionibacterium acnes GN=rplD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 3
Query:  429 LHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +++   I V +   +  G   L GD+FDV     +IH+VV  QLA  +QGTH+TKT  +VSG  KKPWRQKGTGRAR
Sbjct:    1 MNETKTIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGKKPWRQKGTGRAR 77          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_NOCFA (50S ribosomal protein L4 OS=Nocardia farcinica GN=rplD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 3
Query:  438 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +LV+PV     +  G + L  ++FDV     ++H+VV  QLA  +QGTH+TKT  EVSG  KKP+RQKGTGRAR
Sbjct:   15 NLVLPVKEAGGKSNGTVELPAEIFDVTANIALMHQVVTAQLAAARQGTHATKTRGEVSGGGKKPYRQKGTGRAR 88          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_LAWIP (50S ribosomal protein L4 OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=rplD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.578e-13
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 3
Query:  444 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            ++ V N   E+ G + L+  +F+V ++ +I+H VVR QLA ++ GTHS KT   VSG   KPWRQKGTGRAR
Sbjct:    3 IVTVYNQQKEETGKINLSSKIFEVQVQPEILHLVVRAQLAAKRAGTHSVKTRGHVSGGGAKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CLOCE (50S ribosomal protein L4 OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=rplD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.578e-13
Identity = 39/71 (54.93%), Postives = 47/71 (66.20%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + + N   E  G + L+ +VF   + KD +H VV  QLA R+QGT STKT SEV G  KKPWRQKGTGRAR
Sbjct:    4 VDLYNMKGEVVGDIQLSDNVFGTDVNKDALHAVVVNQLANRRQGTQSTKTKSEVRGGGKKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_THETN (50S ribosomal protein L4 OS=Thermoanaerobacter tengcongensis GN=rplD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.673e-13
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +PV N   E  G + L   VF VP+   ++H+ V   LA ++QGTHSTKT  EV G  +KPWRQKGTGRAR
Sbjct:    4 VPVYNVKGEQVGEIELKDSVFGVPVNVAVMHQAVVNYLANQRQGTHSTKTRGEVRGGGRKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_GLUOX (50S ribosomal protein L4 OS=Gluconobacter oxydans GN=rplD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 3
Query:  468 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            N   G + L  ++F V  R DI+ RVV WQLAKR+ GTH TK + E+SG  KKP+RQKGTG AR
Sbjct:   10 NGSAGSVALPEEIFAVTPRSDIMARVVHWQLAKRRAGTHRTKGMGEISGTTKKPYRQKGTGSAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_GLUDA (50S ribosomal protein L4 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 3
Query:  468 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            N   G  VL  ++F V  R DI+ RVV WQLAKR+ GTH  K + EVSG  KKP+RQKGTG AR
Sbjct:   10 NGSAGTAVLPDEIFGVTPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTTKKPYRQKGTGSAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_DESAP (50S ribosomal protein L4 OS=Desulforudis audaxviator (strain MP104C) GN=rplD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 37/69 (53.62%), Postives = 45/69 (65.22%), Query Frame = 3
Query:  453 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            V N   +  G + L+  VF  P+   ++H VV  QLA R+QGTH TKT SEV G  +KPWRQKGTGRAR
Sbjct:    6 VFNIEGQQVGEIELSEAVFGQPVNDAVLHEVVVMQLANRRQGTHDTKTRSEVRGGGRKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CLOTE (50S ribosomal protein L4 OS=Clostridium tetani GN=rplD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  447 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +P    FN++    G   L+  VF V + K+++H+V+  QLA ++QGT S+KT +EVSG  +KPWRQKGTGRAR
Sbjct:    1 MPTVGLFNKEGQKVGDFQLSDKVFGVEVNKEVLHQVIVAQLANKRQGTQSSKTRAEVSGGGRKPWRQKGTGRAR 74          
The following BLAST results are available for this feature:
BLAST of FC920701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RL4_SYNFM2.740e-1351.3550S ribosomal protein L4 OS=Syntrophobacter fumaro... [more]
RL4_PROAC2.740e-1350.6550S ribosomal protein L4 OS=Propionibacterium acne... [more]
RL4_NOCFA2.740e-1351.3550S ribosomal protein L4 OS=Nocardia farcinica GN=... [more]
RL4_LAWIP3.578e-1350.0050S ribosomal protein L4 OS=Lawsonia intracellular... [more]
RL4_CLOCE3.578e-1354.9350S ribosomal protein L4 OS=Clostridium cellulolyt... [more]
RL4_THETN4.673e-1352.1150S ribosomal protein L4 OS=Thermoanaerobacter ten... [more]
RL4_GLUOX6.103e-1356.2550S ribosomal protein L4 OS=Gluconobacter oxydans ... [more]
RL4_GLUDA6.103e-1357.8150S ribosomal protein L4 OS=Gluconacetobacter diaz... [more]
RL4_DESAP6.103e-1353.6250S ribosomal protein L4 OS=Desulforudis audaxviat... [more]
RL4_CLOTE6.103e-1348.6550S ribosomal protein L4 OS=Clostridium tetani GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32011H10EF RVDevelop1 Citrus clementina cDNA clone C32011H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920701 ID=FC920701; Name=FC920701; organism=Citrus clementina; type=EST; length=660bp
CCTCTTTCATCGCCCTCGCTGACGCTGCCACTGTTCTGAAACCCATCTTT
CCGGCGGGAATATCAGTGGCAGTCAATTCTCCGTCTTCATCCGACGGCCT
GGTGTCAGTCATTCAGTTCAGAACTTTAAAGACTTCAAAGTTTTATATGG
CGCTGACTGTCTCTAGAAGGCTTTTACGTCGTTTTGGGTCTTTTTCTGCC
TTTGGTCGTTATGAGTCTCCGAGTTTAACGAGCCGATCAATTCGCTCACC
TCCTGATCTTTATGTGGCTTGTTCTGGGGATAACCTCTTTCCATTAAAGA
GCGGTTTGTCTTTCCTTGCTTCTCGAAAGTTTTCGACTACCATTCTAACA
CCTGACTCGAGTGAAGGTGCTTTTCCTTCTGATTTATTGTCGAAGAAGAC
TGTGCTAACACCAGACATTACTATAGGACTTCATCAAGATCTGGTGATTC
CTGTAACAAATTTCTTTAATGAAGACAAGGGCTTCATGGTCTTGGCTGGC
GATGTTTTTGATGTACCTATTAGGAAGGACATTATCCATCGTGTTGTAAG
ATGGCAGCTTGCAAAACGTCAGCAGGGAACACATTCAACAAAAACTATTA
GTGAGGTTAGTGGAAACTGGAAAAAGCCTTGGCGACAGAAGGGTACTGGT
CGAGCTAGGC
back to top