FC920701
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_SYNFM (50S ribosomal protein L4 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplD PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13 Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 3 Query: 447 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 +P + FN ++ G + L+ VF VP+R ++H VV +QLAKR+ GT TK S+V+G KKPWRQKGTGRAR Sbjct: 1 MPTVDIFNTNRDVVGQLELSDAVFAVPLRPHVLHEVVLYQLAKRRAGTVKTKGRSDVAGGGKKPWRQKGTGRAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_PROAC (50S ribosomal protein L4 OS=Propionibacterium acnes GN=rplD PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13 Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 3 Query: 429 LHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 +++ I V + + G L GD+FDV +IH+VV QLA +QGTH+TKT +VSG KKPWRQKGTGRAR Sbjct: 1 MNETKTIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGKKPWRQKGTGRAR 77
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_NOCFA (50S ribosomal protein L4 OS=Nocardia farcinica GN=rplD PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13 Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 3 Query: 438 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 +LV+PV + G + L ++FDV ++H+VV QLA +QGTH+TKT EVSG KKP+RQKGTGRAR Sbjct: 15 NLVLPVKEAGGKSNGTVELPAEIFDVTANIALMHQVVTAQLAAARQGTHATKTRGEVSGGGKKPYRQKGTGRAR 88
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_LAWIP (50S ribosomal protein L4 OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=rplD PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.578e-13 Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 3 Query: 444 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 ++ V N E+ G + L+ +F+V ++ +I+H VVR QLA ++ GTHS KT VSG KPWRQKGTGRAR Sbjct: 3 IVTVYNQQKEETGKINLSSKIFEVQVQPEILHLVVRAQLAAKRAGTHSVKTRGHVSGGGAKPWRQKGTGRAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CLOCE (50S ribosomal protein L4 OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=rplD PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.578e-13 Identity = 39/71 (54.93%), Postives = 47/71 (66.20%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + + N E G + L+ +VF + KD +H VV QLA R+QGT STKT SEV G KKPWRQKGTGRAR Sbjct: 4 VDLYNMKGEVVGDIQLSDNVFGTDVNKDALHAVVVNQLANRRQGTQSTKTKSEVRGGGKKPWRQKGTGRAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_THETN (50S ribosomal protein L4 OS=Thermoanaerobacter tengcongensis GN=rplD PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.673e-13 Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 +PV N E G + L VF VP+ ++H+ V LA ++QGTHSTKT EV G +KPWRQKGTGRAR Sbjct: 4 VPVYNVKGEQVGEIELKDSVFGVPVNVAVMHQAVVNYLANQRQGTHSTKTRGEVRGGGRKPWRQKGTGRAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_GLUOX (50S ribosomal protein L4 OS=Gluconobacter oxydans GN=rplD PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13 Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 3 Query: 468 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 N G + L ++F V R DI+ RVV WQLAKR+ GTH TK + E+SG KKP+RQKGTG AR Sbjct: 10 NGSAGSVALPEEIFAVTPRSDIMARVVHWQLAKRRAGTHRTKGMGEISGTTKKPYRQKGTGSAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_GLUDA (50S ribosomal protein L4 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplD PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13 Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 3 Query: 468 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 N G VL ++F V R DI+ RVV WQLAKR+ GTH K + EVSG KKP+RQKGTG AR Sbjct: 10 NGSAGTAVLPDEIFGVTPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTTKKPYRQKGTGSAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_DESAP (50S ribosomal protein L4 OS=Desulforudis audaxviator (strain MP104C) GN=rplD PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13 Identity = 37/69 (53.62%), Postives = 45/69 (65.22%), Query Frame = 3 Query: 453 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 V N + G + L+ VF P+ ++H VV QLA R+QGTH TKT SEV G +KPWRQKGTGRAR Sbjct: 6 VFNIEGQQVGEIELSEAVFGQPVNDAVLHEVVVMQLANRRQGTHDTKTRSEVRGGGRKPWRQKGTGRAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CLOTE (50S ribosomal protein L4 OS=Clostridium tetani GN=rplD PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13 Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 3 Query: 447 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 +P FN++ G L+ VF V + K+++H+V+ QLA ++QGT S+KT +EVSG +KPWRQKGTGRAR Sbjct: 1 MPTVGLFNKEGQKVGDFQLSDKVFGVEVNKEVLHQVIVAQLANKRQGTQSSKTRAEVSGGGRKPWRQKGTGRAR 74 The following BLAST results are available for this feature:
BLAST of FC920701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 101
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920701 ID=FC920701; Name=FC920701; organism=Citrus clementina; type=EST; length=660bpback to top |