FC920701

Overview
NameFC920701
Unique NameFC920701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14179 contig Ccv1_Contig14179:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_NEOSM (50S ribosomal protein L4 OS=Neorickettsia sennetsu (strain Miyayama) GN=rplD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 38/68 (55.88%), Postives = 45/68 (66.18%), Query Frame = 3
Query:  474 DKGFMVLAGDV------FDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            D G   LAG V       + P R D++  V+ WQLAKR+ GTH TK ISEVSG  +KP+RQKGTGRAR
Sbjct:   10 DFGASSLAGSVAVDRALIEAPFRPDLLSLVINWQLAKRRAGTHKTKGISEVSGTTRKPYRQKGTGRAR 77          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_DESMR (50S ribosomal protein L4 OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=rplD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.041e-12
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 3
Query:  471 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            ++ G + LA +VF+V ++ +++H VVR QLA ++ GTHS KT + VSG  KKPWRQKGTGRAR
Sbjct:   12 QEIGTVDLAPEVFEVEVQPELLHLVVRAQLAAKRAGTHSVKTRAFVSGGGKKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICTY (50S ribosomal protein L4 OS=Rickettsia typhi GN=rplD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.360e-12
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  453 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + +  NE+ G + L  D+F V  IR DII +V+ WQ AK   G H TKT+SEVSG  KKP++QKGTG AR
Sbjct:    5 ILSLANEEVGEITLNKDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKPFKQKGTGNAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_DESDG (50S ribosomal protein L4 OS=Desulfovibrio desulfuricans (strain G20) GN=rplD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.360e-12
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 3
Query:  453 VTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            V   +++DK   G + LA +VF+V +R +I++ VVR Q A ++ GTHS KT S +SG   KPWRQKGTGRAR
Sbjct:    3 VVKVYDQDKKETGELTLAPEVFEVEVRPEILNLVVRAQRAAKRAGTHSVKTRSTISGGGAKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CLONN (50S ribosomal protein L4 OS=Clostridium novyi (strain NT) GN=rplD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.360e-12
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + + N   +  G + LA  VF V + +D++H+VV  QLA ++QG  S KT +EVSG  KKPWRQKGTGRAR
Sbjct:    4 VDLYNIEGQKVGDLQLAETVFAVEVNEDVLHQVVVAQLANKRQGNQSAKTRAEVSGGGKKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_AGRVS (50S ribosomal protein L4 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rplD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.776e-12
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 3
Query:  474 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            D G + L+  +F +  R+DII R+VRWQLAK+QQGTH TKT +EVS    K ++QKGTGRAR
Sbjct:   12 DAGTVSLSDAIFGLEPRQDIIARMVRWQLAKKQQGTHKTKTRAEVSRTGAKMYKQKGTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_AGRT5 (50S ribosomal protein L4 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.776e-12
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 3
Query:  471 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +D G + L+ ++F +  R+DI+ R+VRWQLAK+QQGTH TK  SEVS    K ++QKGTGRAR
Sbjct:   11 KDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKTKNRSEVSRTGAKMYKQKGTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICFE (50S ribosomal protein L4 OS=Rickettsia felis GN=rplD PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  453 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + +  NE+ G + L  D+F V  IR DII +V+ WQ AK   G H TKT+SEVSG  KKP++QKGTG AR
Sbjct:    5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKPFKQKGTGNAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICCK (50S ribosomal protein L4 OS=Rickettsia canadensis (strain McKiel) GN=rplD PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  453 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + +  NE+ G + L  D+F V  IR DII +V+ WQ AK   G H TKT+SEVSG  KKP++QKGTG AR
Sbjct:    5 ILSLANEEVGEISLNKDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKPFKQKGTGNAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_DESVV (50S ribosomal protein L4 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplD PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 3
Query:  444 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            V+ V +   ++ G + LA +VF+V +R +I+H VVR Q A  + GTH+TKT + VSG   KPWRQKGTGRAR
Sbjct:    3 VVKVYDQNKQEAGEITLAPEVFEVEVRPEILHLVVRAQRAAFRAGTHATKTRAFVSGGGLKPWRQKGTGRAR 74          
The following BLAST results are available for this feature:
BLAST of FC920701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RL4_NEOSM7.971e-1355.8850S ribosomal protein L4 OS=Neorickettsia sennetsu... [more]
RL4_DESMR1.041e-1255.5650S ribosomal protein L4 OS=Desulfovibrio magnetic... [more]
RL4_RICTY1.360e-1252.8650S ribosomal protein L4 OS=Rickettsia typhi GN=rp... [more]
RL4_DESDG1.360e-1251.3950S ribosomal protein L4 OS=Desulfovibrio desulfur... [more]
RL4_CLONN1.360e-1250.7050S ribosomal protein L4 OS=Clostridium novyi (str... [more]
RL4_AGRVS1.776e-1258.0650S ribosomal protein L4 OS=Agrobacterium vitis (s... [more]
RL4_AGRT51.776e-1255.5650S ribosomal protein L4 OS=Agrobacterium tumefaci... [more]
RL4_RICFE2.319e-1252.8650S ribosomal protein L4 OS=Rickettsia felis GN=rp... [more]
RL4_RICCK2.319e-1252.8650S ribosomal protein L4 OS=Rickettsia canadensis ... [more]
RL4_DESVV2.319e-1251.3950S ribosomal protein L4 OS=Desulfovibrio vulgaris... [more]

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Properties
Property NameValue
Genbank descriptionC32011H10EF RVDevelop1 Citrus clementina cDNA clone C32011H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920701 ID=FC920701; Name=FC920701; organism=Citrus clementina; type=EST; length=660bp
CCTCTTTCATCGCCCTCGCTGACGCTGCCACTGTTCTGAAACCCATCTTT
CCGGCGGGAATATCAGTGGCAGTCAATTCTCCGTCTTCATCCGACGGCCT
GGTGTCAGTCATTCAGTTCAGAACTTTAAAGACTTCAAAGTTTTATATGG
CGCTGACTGTCTCTAGAAGGCTTTTACGTCGTTTTGGGTCTTTTTCTGCC
TTTGGTCGTTATGAGTCTCCGAGTTTAACGAGCCGATCAATTCGCTCACC
TCCTGATCTTTATGTGGCTTGTTCTGGGGATAACCTCTTTCCATTAAAGA
GCGGTTTGTCTTTCCTTGCTTCTCGAAAGTTTTCGACTACCATTCTAACA
CCTGACTCGAGTGAAGGTGCTTTTCCTTCTGATTTATTGTCGAAGAAGAC
TGTGCTAACACCAGACATTACTATAGGACTTCATCAAGATCTGGTGATTC
CTGTAACAAATTTCTTTAATGAAGACAAGGGCTTCATGGTCTTGGCTGGC
GATGTTTTTGATGTACCTATTAGGAAGGACATTATCCATCGTGTTGTAAG
ATGGCAGCTTGCAAAACGTCAGCAGGGAACACATTCAACAAAAACTATTA
GTGAGGTTAGTGGAAACTGGAAAAAGCCTTGGCGACAGAAGGGTACTGGT
CGAGCTAGGC
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