FC920701
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_NEOSM (50S ribosomal protein L4 OS=Neorickettsia sennetsu (strain Miyayama) GN=rplD PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13 Identity = 38/68 (55.88%), Postives = 45/68 (66.18%), Query Frame = 3 Query: 474 DKGFMVLAGDV------FDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 D G LAG V + P R D++ V+ WQLAKR+ GTH TK ISEVSG +KP+RQKGTGRAR Sbjct: 10 DFGASSLAGSVAVDRALIEAPFRPDLLSLVINWQLAKRRAGTHKTKGISEVSGTTRKPYRQKGTGRAR 77
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_DESMR (50S ribosomal protein L4 OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=rplD PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.041e-12 Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 3 Query: 471 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 ++ G + LA +VF+V ++ +++H VVR QLA ++ GTHS KT + VSG KKPWRQKGTGRAR Sbjct: 12 QEIGTVDLAPEVFEVEVQPELLHLVVRAQLAAKRAGTHSVKTRAFVSGGGKKPWRQKGTGRAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICTY (50S ribosomal protein L4 OS=Rickettsia typhi GN=rplD PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.360e-12 Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 3 Query: 453 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSG KKP++QKGTG AR Sbjct: 5 ILSLANEEVGEITLNKDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKPFKQKGTGNAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_DESDG (50S ribosomal protein L4 OS=Desulfovibrio desulfuricans (strain G20) GN=rplD PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.360e-12 Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 3 Query: 453 VTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 V +++DK G + LA +VF+V +R +I++ VVR Q A ++ GTHS KT S +SG KPWRQKGTGRAR Sbjct: 3 VVKVYDQDKKETGELTLAPEVFEVEVRPEILNLVVRAQRAAKRAGTHSVKTRSTISGGGAKPWRQKGTGRAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CLONN (50S ribosomal protein L4 OS=Clostridium novyi (strain NT) GN=rplD PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.360e-12 Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + + N + G + LA VF V + +D++H+VV QLA ++QG S KT +EVSG KKPWRQKGTGRAR Sbjct: 4 VDLYNIEGQKVGDLQLAETVFAVEVNEDVLHQVVVAQLANKRQGNQSAKTRAEVSGGGKKPWRQKGTGRAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_AGRVS (50S ribosomal protein L4 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rplD PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.776e-12 Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 3 Query: 474 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 D G + L+ +F + R+DII R+VRWQLAK+QQGTH TKT +EVS K ++QKGTGRAR Sbjct: 12 DAGTVSLSDAIFGLEPRQDIIARMVRWQLAKKQQGTHKTKTRAEVSRTGAKMYKQKGTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_AGRT5 (50S ribosomal protein L4 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplD PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.776e-12 Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 3 Query: 471 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 +D G + L+ ++F + R+DI+ R+VRWQLAK+QQGTH TK SEVS K ++QKGTGRAR Sbjct: 11 KDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKTKNRSEVSRTGAKMYKQKGTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICFE (50S ribosomal protein L4 OS=Rickettsia felis GN=rplD PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12 Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 3 Query: 453 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSG KKP++QKGTG AR Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKPFKQKGTGNAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICCK (50S ribosomal protein L4 OS=Rickettsia canadensis (strain McKiel) GN=rplD PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12 Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 3 Query: 453 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSG KKP++QKGTG AR Sbjct: 5 ILSLANEEVGEISLNKDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKPFKQKGTGNAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_DESVV (50S ribosomal protein L4 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplD PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12 Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 3 Query: 444 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 V+ V + ++ G + LA +VF+V +R +I+H VVR Q A + GTH+TKT + VSG KPWRQKGTGRAR Sbjct: 3 VVKVYDQNKQEAGEITLAPEVFEVEVRPEILHLVVRAQRAAFRAGTHATKTRAFVSGGGLKPWRQKGTGRAR 74 The following BLAST results are available for this feature:
BLAST of FC920701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 101
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920701 ID=FC920701; Name=FC920701; organism=Citrus clementina; type=EST; length=660bpback to top |