FC920701
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_DESVH (50S ribosomal protein L4 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplD PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12 Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 3 Query: 444 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 V+ V + ++ G + LA +VF+V +R +I+H VVR Q A + GTH+TKT + VSG KPWRQKGTGRAR Sbjct: 3 VVKVYDQNKQEAGEITLAPEVFEVEVRPEILHLVVRAQRAAFRAGTHATKTRAFVSGGGLKPWRQKGTGRAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CLOTH (50S ribosomal protein L4 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rplD PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12 Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 3 Query: 480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 G + L D+F + + K IH+V+ QLA R+QGT STKT SEV G +KPWRQKGTGRAR Sbjct: 15 GEINLRDDIFGIEVNKHAIHQVIVNQLANRRQGTQSTKTKSEVRGGGRKPWRQKGTGRAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_THEPX (50S ribosomal protein L4 OS=Thermoanaerobacter sp. (strain X514) GN=rplD PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12 Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + V N E G + L VF VP+ ++H V LA ++QGTHSTKT EV G +KPWRQKGTGRAR Sbjct: 4 VAVYNVKGEQVGEIELKDSVFGVPVNVPVMHEAVLNYLANQRQGTHSTKTRGEVRGGGRKPWRQKGTGRAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_THEP3 (50S ribosomal protein L4 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplD PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12 Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + V N E G + L VF VP+ ++H V LA ++QGTHSTKT EV G +KPWRQKGTGRAR Sbjct: 4 VAVYNVKGEQVGEIELKDSVFGVPVNVPVMHEAVLNYLANQRQGTHSTKTRGEVRGGGRKPWRQKGTGRAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICPR (50S ribosomal protein L4 OS=Rickettsia prowazekii GN=rplD PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12 Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 3 Query: 453 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSG KKP++QKGTG AR Sbjct: 5 ILSLANEEVGEITLNKDIFAVEFIRDDIIKQVIDWQRAKAMFGNHKTKTVSEVSGTTKKPFKQKGTGNAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICAH (50S ribosomal protein L4 OS=Rickettsia akari (strain Hartford) GN=rplD PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12 Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 3 Query: 453 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + + NE+ G + L D+F V IR D+I +V+ WQ AK G H TKT+SEVSG KKP++QKGTG AR Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDVIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKPFKQKGTGNAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_FRASC (50S ribosomal protein L4 OS=Frankia sp. (strain CcI3) GN=rplD PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12 Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 3 Query: 480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 G + L G VFDVP+ +IH+VV QLA +QGTH TKT EV G +KP+RQKGTGRAR Sbjct: 27 GSVELPGGVFDVPLNIPLIHQVVVAQLAAARQGTHDTKTRGEVRGGGRKPYRQKGTGRAR 86
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_ANAPZ (50S ribosomal protein L4 OS=Anaplasma phagocytophilum (strain HZ) GN=rplD PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12 Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + + N NE G + L VF + R+D++ VV WQLAKR+ GTH K IS++SG KP+RQK TGRAR Sbjct: 3 VNIVNIANEVVGSIDLNPQVFGLEPRRDVLKEVVNWQLAKRRAGTHKAKGISDISGTTAKPYRQKHTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_ORITI (50S ribosomal protein L4 OS=Orientia tsutsugamushi (strain Ikeda) GN=rplD PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.956e-12 Identity = 38/71 (53.52%), Postives = 45/71 (63.38%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + V N E + + L VF + R DII V+ WQLAKR GTH TKTIS VSG KKP++QKGTG AR Sbjct: 3 VKVYNLLQEIEKEVELNPSVFCLKYRPDIIKLVIDWQLAKRMSGTHCTKTISGVSGTTKKPFKQKGTGNAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_ORITB (50S ribosomal protein L4 OS=Orientia tsutsugamushi (strain Boryong) GN=rplD PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.956e-12 Identity = 38/71 (53.52%), Postives = 45/71 (63.38%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + V N E + + L VF + R DII V+ WQLAKR GTH TKTIS VSG KKP++QKGTG AR Sbjct: 3 VKVYNLLQEIEKEVELNPSVFCLKYRPDIIKLVIDWQLAKRMSGTHCTKTISGVSGTTKKPFKQKGTGNAR 73 The following BLAST results are available for this feature:
BLAST of FC920701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 101
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920701 ID=FC920701; Name=FC920701; organism=Citrus clementina; type=EST; length=660bpback to top |