FC920701

Overview
NameFC920701
Unique NameFC920701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_DESVH (50S ribosomal protein L4 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplD PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 3
Query:  444 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            V+ V +   ++ G + LA +VF+V +R +I+H VVR Q A  + GTH+TKT + VSG   KPWRQKGTGRAR
Sbjct:    3 VVKVYDQNKQEAGEITLAPEVFEVEVRPEILHLVVRAQRAAFRAGTHATKTRAFVSGGGLKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CLOTH (50S ribosomal protein L4 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rplD PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 3
Query:  480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            G + L  D+F + + K  IH+V+  QLA R+QGT STKT SEV G  +KPWRQKGTGRAR
Sbjct:   15 GEINLRDDIFGIEVNKHAIHQVIVNQLANRRQGTQSTKTKSEVRGGGRKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_THEPX (50S ribosomal protein L4 OS=Thermoanaerobacter sp. (strain X514) GN=rplD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + V N   E  G + L   VF VP+   ++H  V   LA ++QGTHSTKT  EV G  +KPWRQKGTGRAR
Sbjct:    4 VAVYNVKGEQVGEIELKDSVFGVPVNVPVMHEAVLNYLANQRQGTHSTKTRGEVRGGGRKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_THEP3 (50S ribosomal protein L4 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + V N   E  G + L   VF VP+   ++H  V   LA ++QGTHSTKT  EV G  +KPWRQKGTGRAR
Sbjct:    4 VAVYNVKGEQVGEIELKDSVFGVPVNVPVMHEAVLNYLANQRQGTHSTKTRGEVRGGGRKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICPR (50S ribosomal protein L4 OS=Rickettsia prowazekii GN=rplD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  453 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + +  NE+ G + L  D+F V  IR DII +V+ WQ AK   G H TKT+SEVSG  KKP++QKGTG AR
Sbjct:    5 ILSLANEEVGEITLNKDIFAVEFIRDDIIKQVIDWQRAKAMFGNHKTKTVSEVSGTTKKPFKQKGTGNAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICAH (50S ribosomal protein L4 OS=Rickettsia akari (strain Hartford) GN=rplD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  453 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + +  NE+ G + L  D+F V  IR D+I +V+ WQ AK   G H TKT+SEVSG  KKP++QKGTG AR
Sbjct:    5 ILSLANEEVGEISLNEDIFAVEFIRDDVIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKPFKQKGTGNAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_FRASC (50S ribosomal protein L4 OS=Frankia sp. (strain CcI3) GN=rplD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 3
Query:  480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            G + L G VFDVP+   +IH+VV  QLA  +QGTH TKT  EV G  +KP+RQKGTGRAR
Sbjct:   27 GSVELPGGVFDVPLNIPLIHQVVVAQLAAARQGTHDTKTRGEVRGGGRKPYRQKGTGRAR 86          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_ANAPZ (50S ribosomal protein L4 OS=Anaplasma phagocytophilum (strain HZ) GN=rplD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + + N  NE  G + L   VF +  R+D++  VV WQLAKR+ GTH  K IS++SG   KP+RQK TGRAR
Sbjct:    3 VNIVNIANEVVGSIDLNPQVFGLEPRRDVLKEVVNWQLAKRRAGTHKAKGISDISGTTAKPYRQKHTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_ORITI (50S ribosomal protein L4 OS=Orientia tsutsugamushi (strain Ikeda) GN=rplD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.956e-12
Identity = 38/71 (53.52%), Postives = 45/71 (63.38%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + V N   E +  + L   VF +  R DII  V+ WQLAKR  GTH TKTIS VSG  KKP++QKGTG AR
Sbjct:    3 VKVYNLLQEIEKEVELNPSVFCLKYRPDIIKLVIDWQLAKRMSGTHCTKTISGVSGTTKKPFKQKGTGNAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_ORITB (50S ribosomal protein L4 OS=Orientia tsutsugamushi (strain Boryong) GN=rplD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.956e-12
Identity = 38/71 (53.52%), Postives = 45/71 (63.38%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + V N   E +  + L   VF +  R DII  V+ WQLAKR  GTH TKTIS VSG  KKP++QKGTG AR
Sbjct:    3 VKVYNLLQEIEKEVELNPSVFCLKYRPDIIKLVIDWQLAKRMSGTHCTKTISGVSGTTKKPFKQKGTGNAR 73          
The following BLAST results are available for this feature:
BLAST of FC920701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RL4_DESVH2.319e-1251.3950S ribosomal protein L4 OS=Desulfovibrio vulgaris... [more]
RL4_CLOTH2.319e-1258.3350S ribosomal protein L4 OS=Clostridium thermocell... [more]
RL4_THEPX3.029e-1250.7050S ribosomal protein L4 OS=Thermoanaerobacter sp.... [more]
RL4_THEP33.029e-1250.7050S ribosomal protein L4 OS=Thermoanaerobacter pse... [more]
RL4_RICPR3.029e-1252.8650S ribosomal protein L4 OS=Rickettsia prowazekii ... [more]
RL4_RICAH3.029e-1251.4350S ribosomal protein L4 OS=Rickettsia akari (stra... [more]
RL4_FRASC3.029e-1260.0050S ribosomal protein L4 OS=Frankia sp. (strain Cc... [more]
RL4_ANAPZ3.029e-1249.3050S ribosomal protein L4 OS=Anaplasma phagocytophi... [more]
RL4_ORITI3.956e-1253.5250S ribosomal protein L4 OS=Orientia tsutsugamushi... [more]
RL4_ORITB3.956e-1253.5250S ribosomal protein L4 OS=Orientia tsutsugamushi... [more]

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Properties
Property NameValue
Genbank descriptionC32011H10EF RVDevelop1 Citrus clementina cDNA clone C32011H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920701 ID=FC920701; Name=FC920701; organism=Citrus clementina; type=EST; length=660bp
CCTCTTTCATCGCCCTCGCTGACGCTGCCACTGTTCTGAAACCCATCTTT
CCGGCGGGAATATCAGTGGCAGTCAATTCTCCGTCTTCATCCGACGGCCT
GGTGTCAGTCATTCAGTTCAGAACTTTAAAGACTTCAAAGTTTTATATGG
CGCTGACTGTCTCTAGAAGGCTTTTACGTCGTTTTGGGTCTTTTTCTGCC
TTTGGTCGTTATGAGTCTCCGAGTTTAACGAGCCGATCAATTCGCTCACC
TCCTGATCTTTATGTGGCTTGTTCTGGGGATAACCTCTTTCCATTAAAGA
GCGGTTTGTCTTTCCTTGCTTCTCGAAAGTTTTCGACTACCATTCTAACA
CCTGACTCGAGTGAAGGTGCTTTTCCTTCTGATTTATTGTCGAAGAAGAC
TGTGCTAACACCAGACATTACTATAGGACTTCATCAAGATCTGGTGATTC
CTGTAACAAATTTCTTTAATGAAGACAAGGGCTTCATGGTCTTGGCTGGC
GATGTTTTTGATGTACCTATTAGGAAGGACATTATCCATCGTGTTGTAAG
ATGGCAGCTTGCAAAACGTCAGCAGGGAACACATTCAACAAAAACTATTA
GTGAGGTTAGTGGAAACTGGAAAAAGCCTTGGCGACAGAAGGGTACTGGT
CGAGCTAGGC
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