FC920701

Overview
NameFC920701
Unique NameFC920701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14179 contig Ccv1_Contig14179:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CARHZ (50S ribosomal protein L4 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.956e-12
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +PV N      G + L  ++F  P+ K +++ V    LA +++GTH TKT  EVSG  +KPWRQKGTGRAR
Sbjct:    4 VPVYNMEGAQVGEIELKDEIFGAPVNKAVLYEVSLMYLANQRRGTHDTKTRGEVSGGGRKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RHIME (50S ribosomal protein L4 OS=Rhizobium meliloti GN=rplD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + V     +D G + L+  +F +  R+DII RVVRWQLAKRQQGTH +K  +EVS    K ++QKGTGRAR
Sbjct:    3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKSKGRAEVSRTGAKMYKQKGTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RHILO (50S ribosomal protein L4 OS=Rhizobium loti GN=rplD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12
Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + +T    +D G + L+ ++F +  R+DI+ RVVRWQLAK+QQGTH  K  +E++    K ++QKGTGRAR
Sbjct:    3 LKITTLGGKDAGKVKLSEEIFGLDPREDILQRVVRWQLAKKQQGTHKAKGRAEIARTGAKMYKQKGTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCUA (50S ribosomal protein L4 OS=Mycobacterium ulcerans (strain Agy99) GN=rplD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  435 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +DL I V     +  G +VL  ++FDVP    ++H+VV  Q A  +QGTHSTKT  +VSG  +KP+RQKGTGRAR
Sbjct:   10 KDLEIQVKAPDGKVDGSVVLPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGGGRKPYRQKGTGRAR 84          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CALS8 (50S ribosomal protein L4 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +PV N   +  G + L   +F+VPI   ++H+ V   LA R+QGT + KT +EV G  +KPWRQKGTGRAR
Sbjct:    4 VPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGGGRKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_BRAHW (50S ribosomal protein L4 OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=rplD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12
Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + + N   +  G + +  ++F   +  ++++  ++ +LA R+QGTHSTKT +EVSG  KKPWRQKGTGRAR
Sbjct:    3 VVILNENGDSVGNLEIVDEIFKSEVNNNLLYEAIKNELANRRQGTHSTKTRAEVSGGGKKPWRQKGTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_ANATD (50S ribosomal protein L4 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +PV N   +  G + L   +F+VPI   ++H+ V   LA R+QGT + KT +EV G  +KPWRQKGTGRAR
Sbjct:    4 VPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGGGRKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_SINMW (50S ribosomal protein L4 OS=Sinorhizobium medicae (strain WSM419) GN=rplD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.748e-12
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + V     +D G + L+  +F +  R+DII RVVRWQLAKRQQGTH  K  +EVS    K ++QKGTGRAR
Sbjct:    3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKAKGRAEVSRTGAKMYKQKGTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_BRAPL (50S ribosomal protein L4 OS=Brachyspira pilosicoli GN=rplD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.748e-12
Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + + N   +  G + +  ++F   +  ++++  ++ +LA R+QGTHSTKT +EVSG  KKPWRQKGTGRAR
Sbjct:    3 VVILNENGDSVGNLEVVDEIFKSEVNNNLLYEAIKNELANRRQGTHSTKTRAEVSGGGKKPWRQKGTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCSS (50S ribosomal protein L4 OS=Mycobacterium sp. (strain MCS) GN=rplD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 3
Query:  480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            G + L  ++FDV     ++H+VV  QLA ++QGTHSTKT  EVSG  KKP+RQKGTGRAR
Sbjct:   16 GSVELPAELFDVEANIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRAR 75          
The following BLAST results are available for this feature:
BLAST of FC920701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RL4_CARHZ3.956e-1246.4850S ribosomal protein L4 OS=Carboxydothermus hydro... [more]
RL4_RHIME5.167e-1252.1150S ribosomal protein L4 OS=Rhizobium meliloti GN=... [more]
RL4_RHILO5.167e-1246.4850S ribosomal protein L4 OS=Rhizobium loti GN=rplD... [more]
RL4_MYCUA5.167e-1250.6750S ribosomal protein L4 OS=Mycobacterium ulcerans... [more]
RL4_CALS85.167e-1247.8950S ribosomal protein L4 OS=Caldicellulosiruptor s... [more]
RL4_BRAHW5.167e-1243.6650S ribosomal protein L4 OS=Brachyspira hyodysente... [more]
RL4_ANATD5.167e-1247.8950S ribosomal protein L4 OS=Anaerocellum thermophi... [more]
RL4_SINMW6.748e-1252.1150S ribosomal protein L4 OS=Sinorhizobium medicae ... [more]
RL4_BRAPL6.748e-1243.6650S ribosomal protein L4 OS=Brachyspira pilosicoli... [more]
RL4_MYCSS8.813e-1258.3350S ribosomal protein L4 OS=Mycobacterium sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionC32011H10EF RVDevelop1 Citrus clementina cDNA clone C32011H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920701 ID=FC920701; Name=FC920701; organism=Citrus clementina; type=EST; length=660bp
CCTCTTTCATCGCCCTCGCTGACGCTGCCACTGTTCTGAAACCCATCTTT
CCGGCGGGAATATCAGTGGCAGTCAATTCTCCGTCTTCATCCGACGGCCT
GGTGTCAGTCATTCAGTTCAGAACTTTAAAGACTTCAAAGTTTTATATGG
CGCTGACTGTCTCTAGAAGGCTTTTACGTCGTTTTGGGTCTTTTTCTGCC
TTTGGTCGTTATGAGTCTCCGAGTTTAACGAGCCGATCAATTCGCTCACC
TCCTGATCTTTATGTGGCTTGTTCTGGGGATAACCTCTTTCCATTAAAGA
GCGGTTTGTCTTTCCTTGCTTCTCGAAAGTTTTCGACTACCATTCTAACA
CCTGACTCGAGTGAAGGTGCTTTTCCTTCTGATTTATTGTCGAAGAAGAC
TGTGCTAACACCAGACATTACTATAGGACTTCATCAAGATCTGGTGATTC
CTGTAACAAATTTCTTTAATGAAGACAAGGGCTTCATGGTCTTGGCTGGC
GATGTTTTTGATGTACCTATTAGGAAGGACATTATCCATCGTGTTGTAAG
ATGGCAGCTTGCAAAACGTCAGCAGGGAACACATTCAACAAAAACTATTA
GTGAGGTTAGTGGAAACTGGAAAAAGCCTTGGCGACAGAAGGGTACTGGT
CGAGCTAGGC
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