FC920701
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CARHZ (50S ribosomal protein L4 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplD PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.956e-12 Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 +PV N G + L ++F P+ K +++ V LA +++GTH TKT EVSG +KPWRQKGTGRAR Sbjct: 4 VPVYNMEGAQVGEIELKDEIFGAPVNKAVLYEVSLMYLANQRRGTHDTKTRGEVSGGGRKPWRQKGTGRAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RHIME (50S ribosomal protein L4 OS=Rhizobium meliloti GN=rplD PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12 Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + V +D G + L+ +F + R+DII RVVRWQLAKRQQGTH +K +EVS K ++QKGTGRAR Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKSKGRAEVSRTGAKMYKQKGTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RHILO (50S ribosomal protein L4 OS=Rhizobium loti GN=rplD PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12 Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + +T +D G + L+ ++F + R+DI+ RVVRWQLAK+QQGTH K +E++ K ++QKGTGRAR Sbjct: 3 LKITTLGGKDAGKVKLSEEIFGLDPREDILQRVVRWQLAKKQQGTHKAKGRAEIARTGAKMYKQKGTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCUA (50S ribosomal protein L4 OS=Mycobacterium ulcerans (strain Agy99) GN=rplD PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12 Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 3 Query: 435 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 +DL I V + G +VL ++FDVP ++H+VV Q A +QGTHSTKT +VSG +KP+RQKGTGRAR Sbjct: 10 KDLEIQVKAPDGKVDGSVVLPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGGGRKPYRQKGTGRAR 84
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CALS8 (50S ribosomal protein L4 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplD PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12 Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 +PV N + G + L +F+VPI ++H+ V LA R+QGT + KT +EV G +KPWRQKGTGRAR Sbjct: 4 VPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGGGRKPWRQKGTGRAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_BRAHW (50S ribosomal protein L4 OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=rplD PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12 Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + + N + G + + ++F + ++++ ++ +LA R+QGTHSTKT +EVSG KKPWRQKGTGRAR Sbjct: 3 VVILNENGDSVGNLEIVDEIFKSEVNNNLLYEAIKNELANRRQGTHSTKTRAEVSGGGKKPWRQKGTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_ANATD (50S ribosomal protein L4 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplD PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12 Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 +PV N + G + L +F+VPI ++H+ V LA R+QGT + KT +EV G +KPWRQKGTGRAR Sbjct: 4 VPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGGGRKPWRQKGTGRAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_SINMW (50S ribosomal protein L4 OS=Sinorhizobium medicae (strain WSM419) GN=rplD PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.748e-12 Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + V +D G + L+ +F + R+DII RVVRWQLAKRQQGTH K +EVS K ++QKGTGRAR Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKAKGRAEVSRTGAKMYKQKGTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_BRAPL (50S ribosomal protein L4 OS=Brachyspira pilosicoli GN=rplD PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.748e-12 Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + + N + G + + ++F + ++++ ++ +LA R+QGTHSTKT +EVSG KKPWRQKGTGRAR Sbjct: 3 VVILNENGDSVGNLEVVDEIFKSEVNNNLLYEAIKNELANRRQGTHSTKTRAEVSGGGKKPWRQKGTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCSS (50S ribosomal protein L4 OS=Mycobacterium sp. (strain MCS) GN=rplD PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12 Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 3 Query: 480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 G + L ++FDV ++H+VV QLA ++QGTHSTKT EVSG KKP+RQKGTGRAR Sbjct: 16 GSVELPAELFDVEANIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRAR 75 The following BLAST results are available for this feature:
BLAST of FC920701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 101
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920701 ID=FC920701; Name=FC920701; organism=Citrus clementina; type=EST; length=660bpback to top |