FC920701

Overview
NameFC920701
Unique NameFC920701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14179 contig Ccv1_Contig14179:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCSK (50S ribosomal protein L4 OS=Mycobacterium sp. (strain KMS) GN=rplD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 3
Query:  480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            G + L  ++FDV     ++H+VV  QLA ++QGTHSTKT  EVSG  KKP+RQKGTGRAR
Sbjct:   16 GSVELPAELFDVEANIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRAR 75          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCSJ (50S ribosomal protein L4 OS=Mycobacterium sp. (strain JLS) GN=rplD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 3
Query:  480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            G + L  ++FDV     ++H+VV  QLA ++QGTHSTKT  EVSG  KKP+RQKGTGRAR
Sbjct:   16 GSVELPAELFDVEANIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRAR 75          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCMM (50S ribosomal protein L4 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=rplD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  435 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +DL I V     +  G + L  ++FDVP    ++H+VV  Q A  +QGTHSTKT  +VSG  +KP+RQKGTGRAR
Sbjct:   10 KDLEIQVKTPDGKVDGSVALPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGGGRKPYRQKGTGRAR 84          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_DESRM (50S ribosomal protein L4 OS=Desulfotomaculum reducens (strain MI-1) GN=rplD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + + N   E  G + L  +VF +   + ++H  V  QLA ++QGTH TKT +EV G  +KPWRQKGTGRAR
Sbjct:    4 VALYNINGEQVGEVELKDEVFGIEPHEHVMHEAVNMQLANQRQGTHDTKTRAEVRGGGRKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICRS (50S ribosomal protein L4 OS=Rickettsia rickettsii (strain Sheila Smith) GN=rplD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 3
Query:  453 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + +  NE+ G + L  D+F V  IR DII +V+ WQ AK   G H TKT+SEV G  KKP++QKGTG AR
Sbjct:    5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKPFKQKGTGNAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICRO (50S ribosomal protein L4 OS=Rickettsia rickettsii (strain Iowa) GN=rplD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 3
Query:  453 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + +  NE+ G + L  D+F V  IR DII +V+ WQ AK   G H TKT+SEV G  KKP++QKGTG AR
Sbjct:    5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKPFKQKGTGNAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICPU (50S ribosomal protein L4 OS=Rickettsia peacockii (strain Rustic) GN=rplD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 3
Query:  453 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + +  NE+ G + L  D+F V  IR DII +V+ WQ AK   G H TKT+SEV G  KKP++QKGTG AR
Sbjct:    5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKPFKQKGTGNAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICCN (50S ribosomal protein L4 OS=Rickettsia conorii GN=rplD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 3
Query:  453 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + +  NE+ G + L  D+F V  IR DII +V+ WQ AK   G H TKT+SEV G  KKP++QKGTG AR
Sbjct:    5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKPFKQKGTGNAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_DESDA (50S ribosomal protein L4 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=rplD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 31/63 (49.21%), Postives = 46/63 (73.02%), Query Frame = 3
Query:  471 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            ++ G + LA DVF++ +R +I++ V R Q+A ++ GTH+ KT + VSG   KPW+QKGTGRAR
Sbjct:   12 QESGEVTLASDVFEIEVRPEILNLVARAQMAAKRAGTHNVKTRAFVSGGGAKPWKQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICAE (50S ribosomal protein L4 OS=Rickettsia africae (strain ESF-5) GN=rplD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 3
Query:  468 NEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            NE+ G + L  D+F V  IR DII +V+ WQ AK   G H TKT+SEV G  KKP++QKGTG AR
Sbjct:   10 NEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKPFKQKGTGNAR 74          
The following BLAST results are available for this feature:
BLAST of FC920701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RL4_MYCSK8.813e-1258.3350S ribosomal protein L4 OS=Mycobacterium sp. (str... [more]
RL4_MYCSJ8.813e-1258.3350S ribosomal protein L4 OS=Mycobacterium sp. (str... [more]
RL4_MYCMM8.813e-1249.3350S ribosomal protein L4 OS=Mycobacterium marinum ... [more]
RL4_DESRM8.813e-1246.4850S ribosomal protein L4 OS=Desulfotomaculum reduc... [more]
RL4_RICRS1.151e-1151.4350S ribosomal protein L4 OS=Rickettsia rickettsii ... [more]
RL4_RICRO1.151e-1151.4350S ribosomal protein L4 OS=Rickettsia rickettsii ... [more]
RL4_RICPU1.151e-1151.4350S ribosomal protein L4 OS=Rickettsia peacockii (... [more]
RL4_RICCN1.151e-1151.4350S ribosomal protein L4 OS=Rickettsia conorii GN=... [more]
RL4_DESDA1.151e-1149.2150S ribosomal protein L4 OS=Desulfovibrio desulfur... [more]
RL4_RICAE1.503e-1155.3850S ribosomal protein L4 OS=Rickettsia africae (st... [more]

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Properties
Property NameValue
Genbank descriptionC32011H10EF RVDevelop1 Citrus clementina cDNA clone C32011H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920701 ID=FC920701; Name=FC920701; organism=Citrus clementina; type=EST; length=660bp
CCTCTTTCATCGCCCTCGCTGACGCTGCCACTGTTCTGAAACCCATCTTT
CCGGCGGGAATATCAGTGGCAGTCAATTCTCCGTCTTCATCCGACGGCCT
GGTGTCAGTCATTCAGTTCAGAACTTTAAAGACTTCAAAGTTTTATATGG
CGCTGACTGTCTCTAGAAGGCTTTTACGTCGTTTTGGGTCTTTTTCTGCC
TTTGGTCGTTATGAGTCTCCGAGTTTAACGAGCCGATCAATTCGCTCACC
TCCTGATCTTTATGTGGCTTGTTCTGGGGATAACCTCTTTCCATTAAAGA
GCGGTTTGTCTTTCCTTGCTTCTCGAAAGTTTTCGACTACCATTCTAACA
CCTGACTCGAGTGAAGGTGCTTTTCCTTCTGATTTATTGTCGAAGAAGAC
TGTGCTAACACCAGACATTACTATAGGACTTCATCAAGATCTGGTGATTC
CTGTAACAAATTTCTTTAATGAAGACAAGGGCTTCATGGTCTTGGCTGGC
GATGTTTTTGATGTACCTATTAGGAAGGACATTATCCATCGTGTTGTAAG
ATGGCAGCTTGCAAAACGTCAGCAGGGAACACATTCAACAAAAACTATTA
GTGAGGTTAGTGGAAACTGGAAAAAGCCTTGGCGACAGAAGGGTACTGGT
CGAGCTAGGC
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