FC920701
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCSK (50S ribosomal protein L4 OS=Mycobacterium sp. (strain KMS) GN=rplD PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12 Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 3 Query: 480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 G + L ++FDV ++H+VV QLA ++QGTHSTKT EVSG KKP+RQKGTGRAR Sbjct: 16 GSVELPAELFDVEANIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRAR 75
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCSJ (50S ribosomal protein L4 OS=Mycobacterium sp. (strain JLS) GN=rplD PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12 Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 3 Query: 480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 G + L ++FDV ++H+VV QLA ++QGTHSTKT EVSG KKP+RQKGTGRAR Sbjct: 16 GSVELPAELFDVEANIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRAR 75
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCMM (50S ribosomal protein L4 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=rplD PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12 Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 3 Query: 435 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 +DL I V + G + L ++FDVP ++H+VV Q A +QGTHSTKT +VSG +KP+RQKGTGRAR Sbjct: 10 KDLEIQVKTPDGKVDGSVALPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGGGRKPYRQKGTGRAR 84
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_DESRM (50S ribosomal protein L4 OS=Desulfotomaculum reducens (strain MI-1) GN=rplD PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12 Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + + N E G + L +VF + + ++H V QLA ++QGTH TKT +EV G +KPWRQKGTGRAR Sbjct: 4 VALYNINGEQVGEVELKDEVFGIEPHEHVMHEAVNMQLANQRQGTHDTKTRAEVRGGGRKPWRQKGTGRAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICRS (50S ribosomal protein L4 OS=Rickettsia rickettsii (strain Sheila Smith) GN=rplD PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11 Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 3 Query: 453 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV G KKP++QKGTG AR Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKPFKQKGTGNAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICRO (50S ribosomal protein L4 OS=Rickettsia rickettsii (strain Iowa) GN=rplD PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11 Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 3 Query: 453 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV G KKP++QKGTG AR Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKPFKQKGTGNAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICPU (50S ribosomal protein L4 OS=Rickettsia peacockii (strain Rustic) GN=rplD PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11 Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 3 Query: 453 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV G KKP++QKGTG AR Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKPFKQKGTGNAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICCN (50S ribosomal protein L4 OS=Rickettsia conorii GN=rplD PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11 Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 3 Query: 453 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV G KKP++QKGTG AR Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKPFKQKGTGNAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_DESDA (50S ribosomal protein L4 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=rplD PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11 Identity = 31/63 (49.21%), Postives = 46/63 (73.02%), Query Frame = 3 Query: 471 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 ++ G + LA DVF++ +R +I++ V R Q+A ++ GTH+ KT + VSG KPW+QKGTGRAR Sbjct: 12 QESGEVTLASDVFEIEVRPEILNLVARAQMAAKRAGTHNVKTRAFVSGGGAKPWKQKGTGRAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICAE (50S ribosomal protein L4 OS=Rickettsia africae (strain ESF-5) GN=rplD PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11 Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 3 Query: 468 NEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV G KKP++QKGTG AR Sbjct: 10 NEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKPFKQKGTGNAR 74 The following BLAST results are available for this feature:
BLAST of FC920701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 101
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920701 ID=FC920701; Name=FC920701; organism=Citrus clementina; type=EST; length=660bpback to top |