FC920701
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RHISN (50S ribosomal protein L4 OS=Rhizobium sp. (strain NGR234) GN=rplD PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11 Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + V +D G + L+ +F + R+DII RVVRWQLAKRQQGTH K +EV+ K ++QKGTGRAR Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKAKGRAEVARTGAKMYKQKGTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RHIEC (50S ribosomal protein L4 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplD PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11 Identity = 33/63 (52.38%), Postives = 46/63 (73.02%), Query Frame = 3 Query: 471 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 +D G + L+ ++F + R+DI+ RV+RWQLAK+QQGTH K +EVS K ++QKGTGRAR Sbjct: 11 KDAGKVSLSDEIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKMYKQKGTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_PELTS (50S ribosomal protein L4 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplD PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11 Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + + N E G + L ++F V + + ++H V LA R+ GTH TKT SEV G +KPWRQKGTGRAR Sbjct: 4 VALYNTNGEQVGELALKDEIFGVEVHEPVLHDAVVMHLANRRLGTHDTKTRSEVRGGGRKPWRQKGTGRAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCS2 (50S ribosomal protein L4 OS=Mycobacterium smegmatis GN=rplD PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11 Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 3 Query: 480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 G + L ++FDV ++H+VV QLA ++QGTHSTKT EVSG KKP+RQKGTGRAR Sbjct: 16 GSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRAR 75
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CORK4 (50S ribosomal protein L4 OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=rplD PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11 Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 3 Query: 438 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 +L + V G + L VFDV + ++H+VV QLA R+QGTH+TKT +V G +KP+RQKGTGRAR Sbjct: 3 NLTLDVHTADGSTNGTVDLPSSVFDVEVSTPLLHQVVTAQLAARRQGTHATKTRGQVRGGGRKPYRQKGTGRAR 76
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_WOLTR (50S ribosomal protein L4 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=rplD PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.963e-11 Identity = 35/69 (50.72%), Postives = 43/69 (62.32%), Query Frame = 3 Query: 453 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + N N D G L +F V + I+H +VRWQLAKR+ GTH K IS+VSG KP+ QK TGRAR Sbjct: 5 LVNLSNNDVGTTQLNPLIFSVEQKLSILHDIVRWQLAKRRAGTHKVKGISDVSGTTAKPYSQKRTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_ONYPE (50S ribosomal protein L4 OS=Onion yellows phytoplasma GN=rplD PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.963e-11 Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFM---VLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 +P N N+ F+ VLA VFD+ + +++ VV Q A +QGTH+TKT + V+G KKPWRQKGTGRAR Sbjct: 1 MPKINILNQQGDFVSEKVLATTVFDIKPNQQVLYDVVNAQRAAMRQGTHATKTRALVAGGGKKPWRQKGTGRAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_BART1 (50S ribosomal protein L4 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplD PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.963e-11 Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 3 Query: 438 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 DLVI + + G + ++ +FD+ R+DI+ RVVRWQLA+RQQGTH ++ S+VS K ++QKGTGRAR Sbjct: 2 DLVIKTLD--GHEAGKLKVSESIFDLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRTGAKMFKQKGTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCTU (50S ribosomal protein L4 OS=Mycobacterium tuberculosis GN=rplD PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11 Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 3 Query: 480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 G + L ++FDVP ++H+VV Q A +QGTHSTKT EVSG +KP+RQKGTGRAR Sbjct: 22 GAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRAR 81
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCTA (50S ribosomal protein L4 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=rplD PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11 Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 3 Query: 480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 G + L ++FDVP ++H+VV Q A +QGTHSTKT EVSG +KP+RQKGTGRAR Sbjct: 22 GAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRAR 81 The following BLAST results are available for this feature:
BLAST of FC920701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 101
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920701 ID=FC920701; Name=FC920701; organism=Citrus clementina; type=EST; length=660bpback to top |