FC920701

Overview
NameFC920701
Unique NameFC920701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14179 contig Ccv1_Contig14179:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RHISN (50S ribosomal protein L4 OS=Rhizobium sp. (strain NGR234) GN=rplD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + V     +D G + L+  +F +  R+DII RVVRWQLAKRQQGTH  K  +EV+    K ++QKGTGRAR
Sbjct:    3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKAKGRAEVARTGAKMYKQKGTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RHIEC (50S ribosomal protein L4 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 33/63 (52.38%), Postives = 46/63 (73.02%), Query Frame = 3
Query:  471 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +D G + L+ ++F +  R+DI+ RV+RWQLAK+QQGTH  K  +EVS    K ++QKGTGRAR
Sbjct:   11 KDAGKVSLSDEIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKMYKQKGTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_PELTS (50S ribosomal protein L4 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + + N   E  G + L  ++F V + + ++H  V   LA R+ GTH TKT SEV G  +KPWRQKGTGRAR
Sbjct:    4 VALYNTNGEQVGELALKDEIFGVEVHEPVLHDAVVMHLANRRLGTHDTKTRSEVRGGGRKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCS2 (50S ribosomal protein L4 OS=Mycobacterium smegmatis GN=rplD PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 3
Query:  480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            G + L  ++FDV     ++H+VV  QLA ++QGTHSTKT  EVSG  KKP+RQKGTGRAR
Sbjct:   16 GSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRAR 75          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CORK4 (50S ribosomal protein L4 OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=rplD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 3
Query:  438 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +L + V        G + L   VFDV +   ++H+VV  QLA R+QGTH+TKT  +V G  +KP+RQKGTGRAR
Sbjct:    3 NLTLDVHTADGSTNGTVDLPSSVFDVEVSTPLLHQVVTAQLAARRQGTHATKTRGQVRGGGRKPYRQKGTGRAR 76          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_WOLTR (50S ribosomal protein L4 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=rplD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.963e-11
Identity = 35/69 (50.72%), Postives = 43/69 (62.32%), Query Frame = 3
Query:  453 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + N  N D G   L   +F V  +  I+H +VRWQLAKR+ GTH  K IS+VSG   KP+ QK TGRAR
Sbjct:    5 LVNLSNNDVGTTQLNPLIFSVEQKLSILHDIVRWQLAKRRAGTHKVKGISDVSGTTAKPYSQKRTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_ONYPE (50S ribosomal protein L4 OS=Onion yellows phytoplasma GN=rplD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.963e-11
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFM---VLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +P  N  N+   F+   VLA  VFD+   + +++ VV  Q A  +QGTH+TKT + V+G  KKPWRQKGTGRAR
Sbjct:    1 MPKINILNQQGDFVSEKVLATTVFDIKPNQQVLYDVVNAQRAAMRQGTHATKTRALVAGGGKKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_BART1 (50S ribosomal protein L4 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.963e-11
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  438 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            DLVI   +    + G + ++  +FD+  R+DI+ RVVRWQLA+RQQGTH ++  S+VS    K ++QKGTGRAR
Sbjct:    2 DLVIKTLD--GHEAGKLKVSESIFDLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRTGAKMFKQKGTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCTU (50S ribosomal protein L4 OS=Mycobacterium tuberculosis GN=rplD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 3
Query:  480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            G + L  ++FDVP    ++H+VV  Q A  +QGTHSTKT  EVSG  +KP+RQKGTGRAR
Sbjct:   22 GAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRAR 81          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCTA (50S ribosomal protein L4 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=rplD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 3
Query:  480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            G + L  ++FDVP    ++H+VV  Q A  +QGTHSTKT  EVSG  +KP+RQKGTGRAR
Sbjct:   22 GAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRAR 81          
The following BLAST results are available for this feature:
BLAST of FC920701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RL4_RHISN1.503e-1150.7050S ribosomal protein L4 OS=Rhizobium sp. (strain ... [more]
RL4_RHIEC1.503e-1152.3850S ribosomal protein L4 OS=Rhizobium etli (strain... [more]
RL4_PELTS1.503e-1146.4850S ribosomal protein L4 OS=Pelotomaculum thermopr... [more]
RL4_MYCS21.503e-1158.3350S ribosomal protein L4 OS=Mycobacterium smegmati... [more]
RL4_CORK41.503e-1147.3050S ribosomal protein L4 OS=Corynebacterium kroppe... [more]
RL4_WOLTR1.963e-1150.7250S ribosomal protein L4 OS=Wolbachia sp. subsp. B... [more]
RL4_ONYPE1.963e-1148.6550S ribosomal protein L4 OS=Onion yellows phytopla... [more]
RL4_BART11.963e-1148.6550S ribosomal protein L4 OS=Bartonella tribocorum ... [more]
RL4_MYCTU2.564e-1156.6750S ribosomal protein L4 OS=Mycobacterium tubercul... [more]
RL4_MYCTA2.564e-1156.6750S ribosomal protein L4 OS=Mycobacterium tubercul... [more]

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Properties
Property NameValue
Genbank descriptionC32011H10EF RVDevelop1 Citrus clementina cDNA clone C32011H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920701 ID=FC920701; Name=FC920701; organism=Citrus clementina; type=EST; length=660bp
CCTCTTTCATCGCCCTCGCTGACGCTGCCACTGTTCTGAAACCCATCTTT
CCGGCGGGAATATCAGTGGCAGTCAATTCTCCGTCTTCATCCGACGGCCT
GGTGTCAGTCATTCAGTTCAGAACTTTAAAGACTTCAAAGTTTTATATGG
CGCTGACTGTCTCTAGAAGGCTTTTACGTCGTTTTGGGTCTTTTTCTGCC
TTTGGTCGTTATGAGTCTCCGAGTTTAACGAGCCGATCAATTCGCTCACC
TCCTGATCTTTATGTGGCTTGTTCTGGGGATAACCTCTTTCCATTAAAGA
GCGGTTTGTCTTTCCTTGCTTCTCGAAAGTTTTCGACTACCATTCTAACA
CCTGACTCGAGTGAAGGTGCTTTTCCTTCTGATTTATTGTCGAAGAAGAC
TGTGCTAACACCAGACATTACTATAGGACTTCATCAAGATCTGGTGATTC
CTGTAACAAATTTCTTTAATGAAGACAAGGGCTTCATGGTCTTGGCTGGC
GATGTTTTTGATGTACCTATTAGGAAGGACATTATCCATCGTGTTGTAAG
ATGGCAGCTTGCAAAACGTCAGCAGGGAACACATTCAACAAAAACTATTA
GTGAGGTTAGTGGAAACTGGAAAAAGCCTTGGCGACAGAAGGGTACTGGT
CGAGCTAGGC
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