FC920701

Overview
NameFC920701
Unique NameFC920701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14179 contig Ccv1_Contig14179:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCBT (50S ribosomal protein L4 OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=rplD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 3
Query:  480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            G + L  ++FDVP    ++H+VV  Q A  +QGTHSTKT  EVSG  +KP+RQKGTGRAR
Sbjct:   22 GAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRAR 81          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCBP (50S ribosomal protein L4 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=rplD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 3
Query:  480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            G + L  ++FDVP    ++H+VV  Q A  +QGTHSTKT  EVSG  +KP+RQKGTGRAR
Sbjct:   22 GAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRAR 81          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCBO (50S ribosomal protein L4 OS=Mycobacterium bovis GN=rplD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 3
Query:  480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            G + L  ++FDVP    ++H+VV  Q A  +QGTHSTKT  EVSG  +KP+RQKGTGRAR
Sbjct:   22 GAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRAR 81          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_FINM2 (50S ribosomal protein L4 OS=Finegoldia magna (strain ATCC 29328) GN=rplD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + + N   E+ G + L   +F V + + +++ VV+ QLA ++QGT S KT SEV G  +KPWRQKGTGRAR
Sbjct:    4 VQILNQQGENVGELELNEAIFGVDVNEHVVYEVVKNQLANKRQGTQSAKTRSEVRGGGRKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_METNO (50S ribosomal protein L4 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.349e-11
Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 3
Query:  453 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +T     D G + L   +F +  R D++ R VRWQLAKRQ GTH  KT SE+S   KK ++QKGTG AR
Sbjct:    5 ITTLDGADAGSVELDEAIFGLEPRADLLQRCVRWQLAKRQAGTHKVKTRSEISRTTKKMYKQKGTGNAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_WOLWR (50S ribosomal protein L4 OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=rplD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 3
Query:  453 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + N  N++ G   L   +F    +  I+H +VRWQLAKR+ GTH TK IS+VSG   KP+ QK TGRAR
Sbjct:    5 LVNLSNDNVGTAQLNPLIFSAKQKLSILHDIVRWQLAKRRAGTHKTKGISDVSGTTAKPYGQKRTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_WOLPM (50S ribosomal protein L4 OS=Wolbachia pipientis wMel GN=rplD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 3
Query:  453 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + N  N++ G   L   +F    +  I+H +VRWQLAKR+ GTH TK IS+VSG   KP+ QK TGRAR
Sbjct:    5 LVNLSNDNVGAAQLNPLIFSAKQKLSILHDIVRWQLAKRRAGTHKTKGISDVSGTTAKPYGQKRTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RHILW (50S ribosomal protein L4 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 3
Query:  471 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +D G + L+  +F +  R+DI+ RV+RWQLAK+QQGTH  K  +EVS    K ++QKGTGRAR
Sbjct:   11 KDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKMYKQKGTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RHIL3 (50S ribosomal protein L4 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 3
Query:  471 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +D G + L+  +F +  R+DI+ RV+RWQLAK+QQGTH  K  +EVS    K ++QKGTGRAR
Sbjct:   11 KDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKMYKQKGTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RHIE6 (50S ribosomal protein L4 OS=Rhizobium etli (strain CIAT 652) GN=rplD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 3
Query:  471 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +D G + L+  +F +  R+DI+ RV+RWQLAK+QQGTH  K  +EVS    K ++QKGTGRAR
Sbjct:   11 KDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKMYKQKGTGRAR 73          
The following BLAST results are available for this feature:
BLAST of FC920701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RL4_MYCBT2.564e-1156.6750S ribosomal protein L4 OS=Mycobacterium bovis (s... [more]
RL4_MYCBP2.564e-1156.6750S ribosomal protein L4 OS=Mycobacterium bovis (s... [more]
RL4_MYCBO2.564e-1156.6750S ribosomal protein L4 OS=Mycobacterium bovis GN... [more]
RL4_FINM22.564e-1146.4850S ribosomal protein L4 OS=Finegoldia magna (stra... [more]
RL4_METNO3.349e-1149.2850S ribosomal protein L4 OS=Methylobacterium nodul... [more]
RL4_WOLWR4.374e-1149.2850S ribosomal protein L4 OS=Wolbachia sp. subsp. D... [more]
RL4_WOLPM4.374e-1149.2850S ribosomal protein L4 OS=Wolbachia pipientis wM... [more]
RL4_RHILW4.374e-1152.3850S ribosomal protein L4 OS=Rhizobium leguminosaru... [more]
RL4_RHIL34.374e-1152.3850S ribosomal protein L4 OS=Rhizobium leguminosaru... [more]
RL4_RHIE64.374e-1152.3850S ribosomal protein L4 OS=Rhizobium etli (strain... [more]

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Properties
Property NameValue
Genbank descriptionC32011H10EF RVDevelop1 Citrus clementina cDNA clone C32011H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920701 ID=FC920701; Name=FC920701; organism=Citrus clementina; type=EST; length=660bp
CCTCTTTCATCGCCCTCGCTGACGCTGCCACTGTTCTGAAACCCATCTTT
CCGGCGGGAATATCAGTGGCAGTCAATTCTCCGTCTTCATCCGACGGCCT
GGTGTCAGTCATTCAGTTCAGAACTTTAAAGACTTCAAAGTTTTATATGG
CGCTGACTGTCTCTAGAAGGCTTTTACGTCGTTTTGGGTCTTTTTCTGCC
TTTGGTCGTTATGAGTCTCCGAGTTTAACGAGCCGATCAATTCGCTCACC
TCCTGATCTTTATGTGGCTTGTTCTGGGGATAACCTCTTTCCATTAAAGA
GCGGTTTGTCTTTCCTTGCTTCTCGAAAGTTTTCGACTACCATTCTAACA
CCTGACTCGAGTGAAGGTGCTTTTCCTTCTGATTTATTGTCGAAGAAGAC
TGTGCTAACACCAGACATTACTATAGGACTTCATCAAGATCTGGTGATTC
CTGTAACAAATTTCTTTAATGAAGACAAGGGCTTCATGGTCTTGGCTGGC
GATGTTTTTGATGTACCTATTAGGAAGGACATTATCCATCGTGTTGTAAG
ATGGCAGCTTGCAAAACGTCAGCAGGGAACACATTCAACAAAAACTATTA
GTGAGGTTAGTGGAAACTGGAAAAAGCCTTGGCGACAGAAGGGTACTGGT
CGAGCTAGGC
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