FC920701
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCBT (50S ribosomal protein L4 OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=rplD PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11 Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 3 Query: 480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 G + L ++FDVP ++H+VV Q A +QGTHSTKT EVSG +KP+RQKGTGRAR Sbjct: 22 GAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRAR 81
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCBP (50S ribosomal protein L4 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=rplD PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11 Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 3 Query: 480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 G + L ++FDVP ++H+VV Q A +QGTHSTKT EVSG +KP+RQKGTGRAR Sbjct: 22 GAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRAR 81
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCBO (50S ribosomal protein L4 OS=Mycobacterium bovis GN=rplD PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11 Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 3 Query: 480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 G + L ++FDVP ++H+VV Q A +QGTHSTKT EVSG +KP+RQKGTGRAR Sbjct: 22 GAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRAR 81
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_FINM2 (50S ribosomal protein L4 OS=Finegoldia magna (strain ATCC 29328) GN=rplD PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11 Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + + N E+ G + L +F V + + +++ VV+ QLA ++QGT S KT SEV G +KPWRQKGTGRAR Sbjct: 4 VQILNQQGENVGELELNEAIFGVDVNEHVVYEVVKNQLANKRQGTQSAKTRSEVRGGGRKPWRQKGTGRAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_METNO (50S ribosomal protein L4 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplD PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.349e-11 Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 3 Query: 453 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 +T D G + L +F + R D++ R VRWQLAKRQ GTH KT SE+S KK ++QKGTG AR Sbjct: 5 ITTLDGADAGSVELDEAIFGLEPRADLLQRCVRWQLAKRQAGTHKVKTRSEISRTTKKMYKQKGTGNAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_WOLWR (50S ribosomal protein L4 OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=rplD PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11 Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 3 Query: 453 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + N N++ G L +F + I+H +VRWQLAKR+ GTH TK IS+VSG KP+ QK TGRAR Sbjct: 5 LVNLSNDNVGTAQLNPLIFSAKQKLSILHDIVRWQLAKRRAGTHKTKGISDVSGTTAKPYGQKRTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_WOLPM (50S ribosomal protein L4 OS=Wolbachia pipientis wMel GN=rplD PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11 Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 3 Query: 453 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + N N++ G L +F + I+H +VRWQLAKR+ GTH TK IS+VSG KP+ QK TGRAR Sbjct: 5 LVNLSNDNVGAAQLNPLIFSAKQKLSILHDIVRWQLAKRRAGTHKTKGISDVSGTTAKPYGQKRTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RHILW (50S ribosomal protein L4 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplD PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11 Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 3 Query: 471 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K +EVS K ++QKGTGRAR Sbjct: 11 KDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKMYKQKGTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RHIL3 (50S ribosomal protein L4 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplD PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11 Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 3 Query: 471 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K +EVS K ++QKGTGRAR Sbjct: 11 KDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKMYKQKGTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RHIE6 (50S ribosomal protein L4 OS=Rhizobium etli (strain CIAT 652) GN=rplD PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11 Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 3 Query: 471 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K +EVS K ++QKGTGRAR Sbjct: 11 KDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKMYKQKGTGRAR 73 The following BLAST results are available for this feature:
BLAST of FC920701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 101
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920701 ID=FC920701; Name=FC920701; organism=Citrus clementina; type=EST; length=660bpback to top |