FC920701

Overview
NameFC920701
Unique NameFC920701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14179 contig Ccv1_Contig14179:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCSM (50S ribosomal protein L4 OS=Mycobacterium smegmatis GN=rplD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 3
Query:  480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            G + L  ++FDV     ++H+VV  QLA ++QGTHSTKT  EVSG  KKP+RQKG+GRAR
Sbjct:   16 GSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGSGRAR 75          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_HALOH (50S ribosomal protein L4 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rplD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 3
Query:  480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            G + LA +VF+  + + ++H+VV  QLA  ++GT STKT  EVSG  +KPWRQKGTGRAR
Sbjct:   15 GDIDLADNVFNEEVNEHVVHQVVTAQLATMRRGTASTKTRGEVSGGGRKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_GRABC (50S ribosomal protein L4 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 35/71 (49.30%), Postives = 42/71 (59.15%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            I +    N   G   L  ++F    R DI+ RVV WQLA R+ GTH  K + EVSG  KKP+RQKGTG AR
Sbjct:    3 IEIKTLDNGSAGTAELPDEIFAATPRADIMARVVHWQLACRRAGTHKVKGMGEVSGTTKKPYRQKGTGNAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_EHRRG (50S ribosomal protein L4 OS=Ehrlichia ruminantium (strain Gardel) GN=rplD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + V N  +++ G + L   +F V  R DI+  VV WQL+KR+ G H TKTI +VSG   KP+RQK TGRAR
Sbjct:    3 VNVINIESQNIGKIDLNPLIFSVNYRPDILKMVVEWQLSKRRVGAHKTKTIGDVSGTTAKPYRQKHTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_DESAH (50S ribosomal protein L4 OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=rplD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + V N   E      LA +VF +P++K ++H VVR QLA+R+ GT  +K  SEVSG+ +K +RQKGTG AR
Sbjct:    4 VDVLNRSGEKVSEAFLADEVFSIPVKKSVLHDVVRMQLARRRSGTAKSKGRSEVSGSTRKLYRQKGTGNAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_PELPD (50S ribosomal protein L4 OS=Pelobacter propionicus (strain DSM 2379) GN=rplD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            I V N   +  G + LA DVF+  +++ ++H  +R QLA R+ GT  TKT SEV+G+ KKP++QKGTG AR
Sbjct:    4 IAVYNMNRQQVGELQLADDVFNADVKEHLMHLALRIQLANRRAGTVKTKTRSEVAGSGKKPFKQKGTGNAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_EHRRW (50S ribosomal protein L4 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rplD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + V N  +++ G + L   +F V  R DI+  VV WQL+KR+ G H TKTI +VSG   KP+RQK TGRAR
Sbjct:    3 VNVINIESQNIGKIDLNPLIFSVNYRPDILKMVVEWQLSKRRIGAHKTKTIGDVSGTTAKPYRQKHTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_EHRCJ (50S ribosomal protein L4 OS=Ehrlichia canis (strain Jake) GN=rplD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 3
Query:  468 NEDK-GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            N DK G + L   +F V  R DI+  VV WQL+KR+ GTH  KTI ++SG   KP+RQK TGRAR
Sbjct:    9 NSDKIGTIDLNPLIFSVDYRPDILKMVVNWQLSKRRAGTHKAKTIGDISGTTAKPYRQKHTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CLOBL (50S ribosomal protein L4 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 3
Query:  447 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +P  + FN   E  G + LA  VF V +    +H+VV+  LA ++QGT S KT +EVSG   KPWRQKGTGRAR
Sbjct:    1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGGGIKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CLOBJ (50S ribosomal protein L4 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rplD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 3
Query:  447 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +P  + FN   E  G + LA  VF V +    +H+VV+  LA ++QGT S KT +EVSG   KPWRQKGTGRAR
Sbjct:    1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGGGIKPWRQKGTGRAR 74          
The following BLAST results are available for this feature:
BLAST of FC920701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RL4_MYCSM4.374e-1156.6750S ribosomal protein L4 OS=Mycobacterium smegmati... [more]
RL4_HALOH4.374e-1155.0050S ribosomal protein L4 OS=Halothermothrix orenii... [more]
RL4_GRABC4.374e-1149.3050S ribosomal protein L4 OS=Granulibacter bethesde... [more]
RL4_EHRRG4.374e-1149.3050S ribosomal protein L4 OS=Ehrlichia ruminantium ... [more]
RL4_DESAH4.374e-1147.8950S ribosomal protein L4 OS=Desulfobacterium autot... [more]
RL4_PELPD5.713e-1147.8950S ribosomal protein L4 OS=Pelobacter propionicus... [more]
RL4_EHRRW5.713e-1149.3050S ribosomal protein L4 OS=Ehrlichia ruminantium ... [more]
RL4_EHRCJ5.713e-1153.8550S ribosomal protein L4 OS=Ehrlichia canis (strai... [more]
RL4_CLOBL5.713e-1150.0050S ribosomal protein L4 OS=Clostridium botulinum ... [more]
RL4_CLOBJ5.713e-1150.0050S ribosomal protein L4 OS=Clostridium botulinum ... [more]

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Properties
Property NameValue
Genbank descriptionC32011H10EF RVDevelop1 Citrus clementina cDNA clone C32011H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920701 ID=FC920701; Name=FC920701; organism=Citrus clementina; type=EST; length=660bp
CCTCTTTCATCGCCCTCGCTGACGCTGCCACTGTTCTGAAACCCATCTTT
CCGGCGGGAATATCAGTGGCAGTCAATTCTCCGTCTTCATCCGACGGCCT
GGTGTCAGTCATTCAGTTCAGAACTTTAAAGACTTCAAAGTTTTATATGG
CGCTGACTGTCTCTAGAAGGCTTTTACGTCGTTTTGGGTCTTTTTCTGCC
TTTGGTCGTTATGAGTCTCCGAGTTTAACGAGCCGATCAATTCGCTCACC
TCCTGATCTTTATGTGGCTTGTTCTGGGGATAACCTCTTTCCATTAAAGA
GCGGTTTGTCTTTCCTTGCTTCTCGAAAGTTTTCGACTACCATTCTAACA
CCTGACTCGAGTGAAGGTGCTTTTCCTTCTGATTTATTGTCGAAGAAGAC
TGTGCTAACACCAGACATTACTATAGGACTTCATCAAGATCTGGTGATTC
CTGTAACAAATTTCTTTAATGAAGACAAGGGCTTCATGGTCTTGGCTGGC
GATGTTTTTGATGTACCTATTAGGAAGGACATTATCCATCGTGTTGTAAG
ATGGCAGCTTGCAAAACGTCAGCAGGGAACACATTCAACAAAAACTATTA
GTGAGGTTAGTGGAAACTGGAAAAAGCCTTGGCGACAGAAGGGTACTGGT
CGAGCTAGGC
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