FC920701
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MYCSM (50S ribosomal protein L4 OS=Mycobacterium smegmatis GN=rplD PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11 Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 3 Query: 480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 G + L ++FDV ++H+VV QLA ++QGTHSTKT EVSG KKP+RQKG+GRAR Sbjct: 16 GSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGSGRAR 75
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_HALOH (50S ribosomal protein L4 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rplD PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11 Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 3 Query: 480 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 G + LA +VF+ + + ++H+VV QLA ++GT STKT EVSG +KPWRQKGTGRAR Sbjct: 15 GDIDLADNVFNEEVNEHVVHQVVTAQLATMRRGTASTKTRGEVSGGGRKPWRQKGTGRAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_GRABC (50S ribosomal protein L4 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplD PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11 Identity = 35/71 (49.30%), Postives = 42/71 (59.15%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 I + N G L ++F R DI+ RVV WQLA R+ GTH K + EVSG KKP+RQKGTG AR Sbjct: 3 IEIKTLDNGSAGTAELPDEIFAATPRADIMARVVHWQLACRRAGTHKVKGMGEVSGTTKKPYRQKGTGNAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_EHRRG (50S ribosomal protein L4 OS=Ehrlichia ruminantium (strain Gardel) GN=rplD PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11 Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + V N +++ G + L +F V R DI+ VV WQL+KR+ G H TKTI +VSG KP+RQK TGRAR Sbjct: 3 VNVINIESQNIGKIDLNPLIFSVNYRPDILKMVVEWQLSKRRVGAHKTKTIGDVSGTTAKPYRQKHTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_DESAH (50S ribosomal protein L4 OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=rplD PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11 Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + V N E LA +VF +P++K ++H VVR QLA+R+ GT +K SEVSG+ +K +RQKGTG AR Sbjct: 4 VDVLNRSGEKVSEAFLADEVFSIPVKKSVLHDVVRMQLARRRSGTAKSKGRSEVSGSTRKLYRQKGTGNAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_PELPD (50S ribosomal protein L4 OS=Pelobacter propionicus (strain DSM 2379) GN=rplD PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11 Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 I V N + G + LA DVF+ +++ ++H +R QLA R+ GT TKT SEV+G+ KKP++QKGTG AR Sbjct: 4 IAVYNMNRQQVGELQLADDVFNADVKEHLMHLALRIQLANRRAGTVKTKTRSEVAGSGKKPFKQKGTGNAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_EHRRW (50S ribosomal protein L4 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rplD PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11 Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + V N +++ G + L +F V R DI+ VV WQL+KR+ G H TKTI +VSG KP+RQK TGRAR Sbjct: 3 VNVINIESQNIGKIDLNPLIFSVNYRPDILKMVVEWQLSKRRIGAHKTKTIGDVSGTTAKPYRQKHTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_EHRCJ (50S ribosomal protein L4 OS=Ehrlichia canis (strain Jake) GN=rplD PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11 Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 3 Query: 468 NEDK-GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 N DK G + L +F V R DI+ VV WQL+KR+ GTH KTI ++SG KP+RQK TGRAR Sbjct: 9 NSDKIGTIDLNPLIFSVDYRPDILKMVVNWQLSKRRAGTHKAKTIGDISGTTAKPYRQKHTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CLOBL (50S ribosomal protein L4 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplD PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11 Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 3 Query: 447 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 +P + FN E G + LA VF V + +H+VV+ LA ++QGT S KT +EVSG KPWRQKGTGRAR Sbjct: 1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGGGIKPWRQKGTGRAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CLOBJ (50S ribosomal protein L4 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rplD PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11 Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 3 Query: 447 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 +P + FN E G + LA VF V + +H+VV+ LA ++QGT S KT +EVSG KPWRQKGTGRAR Sbjct: 1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGGGIKPWRQKGTGRAR 74 The following BLAST results are available for this feature:
BLAST of FC920701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 101
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920701 ID=FC920701; Name=FC920701; organism=Citrus clementina; type=EST; length=660bpback to top |