FC920701

Overview
NameFC920701
Unique NameFC920701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14179 contig Ccv1_Contig14179:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CLOBH (50S ribosomal protein L4 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rplD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 3
Query:  447 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +P  + FN   E  G + LA  VF V +    +H+VV+  LA ++QGT S KT +EVSG   KPWRQKGTGRAR
Sbjct:    1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGGGIKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CLOB6 (50S ribosomal protein L4 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rplD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 3
Query:  447 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +P  + FN   E  G + LA  VF V +    +H+VV+  LA ++QGT S KT +EVSG   KPWRQKGTGRAR
Sbjct:    1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGGGIKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CLOB1 (50S ribosomal protein L4 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rplD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 3
Query:  447 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +P  + FN   E  G + LA  VF V +    +H+VV+  LA ++QGT S KT +EVSG   KPWRQKGTGRAR
Sbjct:    1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGGGIKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_DESVM (50S ribosomal protein L4 OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=rplD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 3
Query:  444 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            V+ V +   ++ G + LA +VF+V ++ +I++ VVR   A  + GTH+TKT + VSG   KPWRQKGTGRAR
Sbjct:    3 VVKVYDQNKKEAGELTLAPEVFEVEVKPEILNLVVRAHRAGLRSGTHATKTRAFVSGGGAKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CLOBK (50S ribosomal protein L4 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 3
Query:  447 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +P  + FN   E  G + LA  VF V +    +H+VV+  LA ++QGT S KT +EVSG   KPWRQKGTGRAR
Sbjct:    1 MPKIDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGGGIKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_EUBE2 (50S ribosomal protein L4 OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=rplD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + V N   ++ G + L   VF V + + ++H  V  QLA  +QGT S KT SEVSG  +KPWRQKGTG AR
Sbjct:    4 VSVYNIEGKEVGSIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQSAKTRSEVSGGGRKPWRQKGTGHAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_COREF (50S ribosomal protein L4 OS=Corynebacterium efficiens GN=rplD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 3
Query:  438 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +L + V        G + L  ++FD  +   ++H+VV  QLA  +QGTHSTKT +EV G  +KP+RQKGTGRAR
Sbjct:    3 NLTLDVQTAEGTTNGSVDLPAEIFDREVSVALLHQVVNAQLAAARQGTHSTKTRAEVRGGGRKPFRQKGTGRAR 76          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CLOBB (50S ribosomal protein L4 OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=rplD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 3
Query:  447 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +P    FN++    G + L  +VF+V + K  +H+VV   LA ++QGT S KT +EV G   KPWRQKGTGRAR
Sbjct:    1 MPTVGLFNQEGKQVGDIQLNANVFEVEVNKHALHQVVVALLANKRQGTQSAKTRTEVRGGGIKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_CLOBA (50S ribosomal protein L4 OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=rplD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 3
Query:  447 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +P    FN++    G + L  +VF+V + K  +H+VV   LA ++QGT S KT +EV G   KPWRQKGTGRAR
Sbjct:    1 MPTVGLFNQEGKQVGDIQLNANVFEVEVNKHALHQVVVALLANKRQGTQSAKTRTEVRGGGIKPWRQKGTGRAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_AYWBP (50S ribosomal protein L4 OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=rplD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFM---VLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +P  N  N+    +   VLA  VFD+   + +++ VV  Q A  +QGTH+TKT + V+G  KKPWRQKGTGRAR
Sbjct:    1 MPKINILNQQGDLVSEKVLATTVFDIKPNQQVLYDVVNAQRAAMRQGTHATKTRALVAGGGKKPWRQKGTGRAR 74          
The following BLAST results are available for this feature:
BLAST of FC920701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RL4_CLOBH5.713e-1150.0050S ribosomal protein L4 OS=Clostridium botulinum ... [more]
RL4_CLOB65.713e-1150.0050S ribosomal protein L4 OS=Clostridium botulinum ... [more]
RL4_CLOB15.713e-1150.0050S ribosomal protein L4 OS=Clostridium botulinum ... [more]
RL4_DESVM7.461e-1147.2250S ribosomal protein L4 OS=Desulfovibrio vulgaris... [more]
RL4_CLOBK7.461e-1150.0050S ribosomal protein L4 OS=Clostridium botulinum ... [more]
RL4_EUBE29.744e-1147.8950S ribosomal protein L4 OS=Eubacterium eligens (s... [more]
RL4_COREF9.744e-1145.9550S ribosomal protein L4 OS=Corynebacterium effici... [more]
RL4_CLOBB9.744e-1147.3050S ribosomal protein L4 OS=Clostridium botulinum ... [more]
RL4_CLOBA9.744e-1147.3050S ribosomal protein L4 OS=Clostridium botulinum ... [more]
RL4_AYWBP9.744e-1147.3050S ribosomal protein L4 OS=Aster yellows witches'... [more]

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Properties
Property NameValue
Genbank descriptionC32011H10EF RVDevelop1 Citrus clementina cDNA clone C32011H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920701 ID=FC920701; Name=FC920701; organism=Citrus clementina; type=EST; length=660bp
CCTCTTTCATCGCCCTCGCTGACGCTGCCACTGTTCTGAAACCCATCTTT
CCGGCGGGAATATCAGTGGCAGTCAATTCTCCGTCTTCATCCGACGGCCT
GGTGTCAGTCATTCAGTTCAGAACTTTAAAGACTTCAAAGTTTTATATGG
CGCTGACTGTCTCTAGAAGGCTTTTACGTCGTTTTGGGTCTTTTTCTGCC
TTTGGTCGTTATGAGTCTCCGAGTTTAACGAGCCGATCAATTCGCTCACC
TCCTGATCTTTATGTGGCTTGTTCTGGGGATAACCTCTTTCCATTAAAGA
GCGGTTTGTCTTTCCTTGCTTCTCGAAAGTTTTCGACTACCATTCTAACA
CCTGACTCGAGTGAAGGTGCTTTTCCTTCTGATTTATTGTCGAAGAAGAC
TGTGCTAACACCAGACATTACTATAGGACTTCATCAAGATCTGGTGATTC
CTGTAACAAATTTCTTTAATGAAGACAAGGGCTTCATGGTCTTGGCTGGC
GATGTTTTTGATGTACCTATTAGGAAGGACATTATCCATCGTGTTGTAAG
ATGGCAGCTTGCAAAACGTCAGCAGGGAACACATTCAACAAAAACTATTA
GTGAGGTTAGTGGAAACTGGAAAAAGCCTTGGCGACAGAAGGGTACTGGT
CGAGCTAGGC
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