FC920703

Overview
NameFC920703
Unique NameFC920703
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15198 contig Ccv1_Contig15198:447..1149. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_CHLAT (Pyruvate dehydrogenase E1 component subunit beta OS=Chlorokybus atmophyticus GN=pdhB PE=3 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 9.188e-79
Identity = 140/223 (62.78%), Postives = 174/223 (78.03%), Query Frame = 2
Query:   14 FPFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKG 682
            F FEAL++ ++EEM+R+  V ++GED+GHYGGSYKVT+GL  KYG  RV+DTPIAE SF G  +GAA TGL P+VEGMNM F+LLA++QISNN GML  TSGG F              QLGAEHSQRLESYFQS+PG+Q+V CSTPYNAKGL+K+AIRS+NP++  EHVLLYNLK  +PD +Y+  LE+AE+VR G  +T+LTYSR RY+V+QA K LV +G
Sbjct:    5 FLFEALQKAIDEEMEREKRVVLIGEDIGHYGGSYKVTQGLYGKYGKHRVIDTPIAEYSFVGAAVGAAATGLIPVVEGMNMAFILLAYSQISNNMGMLCATSGGHFQVPMVLRGPGGIGKQLGAEHSQRLESYFQSVPGLQIVTCSTPYNAKGLLKSAIRSKNPILFIEHVLLYNLKGEVPDNDYLLPLEKAELVREGSDITVLTYSRQRYNVIQAVKVLVEEG 227          

HSP 2 Score: 23.0978 bits (48), Expect = 9.188e-79
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  673 KQGYDPEVID 702
            ++GYDPEVID
Sbjct:  225 EEGYDPEVID 234          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_DICDI (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.372e-45
Identity = 92/225 (40.89%), Postives = 142/225 (63.11%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN----LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGM 685
            +A+   L+EE+ RD  V +MGE+V  Y G+YK+TKGL DKYG  R++DTPI E  F G+G+GAAM G RPI+E M   F + A + I N+    HY SGG+                +GA+HSQ   +++ S+PG+++VA  +  + +GL+K+AIR +NPV+  E  LLYN    L ++  D+EY+  + +A++ R G+ VTI+ +SR+  + M+AA+ L  +G+
Sbjct:   33 DAINSALDEELARDEKVFIMGEEVAQYNGAYKITKGLFDKYGGDRIIDTPITEAGFAGIGVGAAMAGTRPIIEFMTFNFAMQAIDHIINSSAKTHYMSGGKVFNPIVWRGPNGPPTAVGAQHSQCFAAWYGSVPGLKVVAPWSAADHRGLLKSAIRDDNPVVYLESELLYNYKFDLSDQEQDKEYLVPIGKAKVEREGKDVTIVGFSRIVSNCMEAAEILAKEGI 257          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 5.844e-44
Identity = 91/222 (40.99%), Postives = 140/222 (63.06%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPD-EEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGM 685
            EALR+ + EEM RD  V VMGE+V  Y G+YKVT+GL  ++G  RV+DTPI+E  F+G+G+GAAM GLRP++E M M F + A + I N+    HY SGGQ               ++GA+H+Q    ++ ++PG+ ++A     +AKGL+KAAIRS++PV+  E  LLY     +P  ++++  + +A ++R G+ VTI++YS      + AA+ L  +G+
Sbjct:  143 EALRDAMAEEMRRDDRVFVMGEEVAEYQGAYKVTQGLLQEFGARRVVDTPISEYGFSGIGVGAAMEGLRPVIEFMTMNFSMQAIDHIINSAAKTHYMSGGQVRCPIVFRGPNGAAPRVGAQHTQNFGPWYAAVPGLVVLAPYDAIDAKGLLKAAIRSDDPVVFLECELLYGKTFDVPKMDDFVLPIGKARIIREGKDVTIVSYSIGVSFALTAAEALAKEGI 364          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 9.968e-44
Identity = 91/225 (40.44%), Postives = 138/225 (61.33%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN----LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGM 685
            +AL   ++EEM  DP V VMGE+VG Y G+YK+TKGL +KYG  RV DTPI E  FTG+G+GAA  GL+P+VE M   F + A + I N+    +Y S GQ                +GA+HSQ   +++ S+PG++++A  +  +A+GL+KAAIR  +PV+  E+ LLY     + E   D  +   + +A++ R G+ VTI+T+S+M    ++AA+ L  +G+
Sbjct:   40 DALNSAIDEEMSADPKVFVMGEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEALDSSFCLPIGKAKIEREGKDVTIVTFSKMVGFALKAAEKLAEEGI 264          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODBB_THET2 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1756 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.968e-44
Identity = 93/227 (40.97%), Postives = 137/227 (60.35%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGMILRLL 700
            +AL   L+EEM +DP V V+GEDVG  GG + VT+GL  KYG  RV+DTP++E +  G  +G A  GLRP+ E     ++   F+Q+ +    L Y SGGQFT             + G  HSQ  E++F    G+++VA STPY+AKGL+KAAIR E+PV+  E   LY ++KE +P+E+Y  ++ +A + R G+ +T++ Y  +   V+QAA  L   G+   +L
Sbjct:    8 QALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKEEVPEEDYTLSIGKAALRREGKDLTLIGYGTVMPEVLQAAAELAKAGVSAEVL 234          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODBB_BACSU (2-oxoisovalerate dehydrogenase subunit beta OS=Bacillus subtilis GN=bfmBAB PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.700e-43
Identity = 88/222 (39.64%), Postives = 138/222 (62.16%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL-KERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGM 685
            +A+   ++EEM+RD  V V+GEDVG  GG +K T GL +++G+ RV+DTP+AE++  G+GIGAAM G+RPI E     F++ A NQI +    + Y S   ++                  HSQ +E+ F + PG+++V  STPY+AKGL+KAA+R E+PV+ FEH   Y L K  +P ++Y+  + +A++ R G+ +T++TY    +  +QAA+ L   G+
Sbjct:    8 DAINLAMKEEMERDSRVFVLGEDVGRKGGVFKATAGLYEQFGEERVMDTPLAESAIAGVGIGAAMYGMRPIAEMQFADFIMPAVNQIISEAAKIRYRSNNDWSCPIVVRAPYGGGVHGALYHSQSVEAIFANQPGLKIVMPSTPYDAKGLLKAAVRDEDPVLFFEHKRAYRLIKGEVPADDYVLPIGKADVKREGDDITVITYGLCVHFALQAAERLEKDGI 229          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODBB_THET8 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.221e-43
Identity = 93/227 (40.97%), Postives = 136/227 (59.91%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGMILRLL 700
            +AL   L+EEM +DP V V+GEDVG  GG + VT+GL  KYG  RV+DTP++E +  G  +G A  GLRP+ E     ++   F+Q+ +    L Y SGGQFT             + G  HSQ  E++F    G+++VA STPY+AKGL+KAAIR E+PV+  E   LY ++KE +P+E+Y   + +A + R G+ +T++ Y  +   V+QAA  L   G+   +L
Sbjct:    8 QALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKEEVPEEDYTLPIGKAALRREGKDLTLIGYGTVMPEVLQAAAELAKAGVSAEVL 234          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_BOVIN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.439e-42
Identity = 86/225 (38.22%), Postives = 141/225 (62.67%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGM 685
            EA+ +G++EE++RD  V ++GE+V  Y G+YKV++GL  KYGD R++DTPI+E  F G+ +GAAM GLRPI E M   F + A +Q+ N+    +Y SGG  +              + A+HSQ   +++   PG+++V+  +  +AKGL+K+AIR  NPV++ E+ L+Y +   +P E    +++  + +A++ R G HVTI+ +SR   H ++AA  L  +G+
Sbjct:   37 EAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQSVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPSEAQSKDFLIPIGKAKIERQGTHVTIVAHSRPVGHCLEAATVLSKEGI 261          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_RAT (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.591e-41
Identity = 83/225 (36.89%), Postives = 139/225 (61.78%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGM 685
            EA+ +G++EE++RD  V ++GE+V  Y G+YKV++GL  KYGD R++DTPI+E  F G+ +GAAM GLRPI E M   F + A +Q+ N+    +Y S G                 + A+HSQ   +++   PG+++V+     +AKGL+K+AIR +NPV++ E+ L+Y +   +P E    +++  + +A++ R G H+T++ +SR   H ++AA  L  +G+
Sbjct:   37 EAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDDNPVVMLENELMYGVAFELPTEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGI 261          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_RICFE (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia felis GN=pdhB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.078e-41
Identity = 90/218 (41.28%), Postives = 128/218 (58.72%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVN 676
            EALR+ ++EEM RD  V VMGE+V  Y G+YKVT+GL +++G  RV+DTPI E  F G+ +GAA  GLRPIVE M   F + AF+ I N+    HY SGGQ               ++ A+HSQ   + +  +PG+++VA  +  + KGLM  AIR +NPVI  E+ +LY     +P+        +A+++R G  VTI+T+S      + AA  L N
Sbjct:    7 EALRDAMQEEMIRDDKVFVMGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQAKCPIVFRGPNGAASRVAAQHSQNYTACYSHVPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSFDVPETIEPIPFGQAKILREGSSVTIVTFSIQVKLALDAANVLQN 224          
The following BLAST results are available for this feature:
BLAST of FC920703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_CHLAT9.188e-7962.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_DICDI2.372e-4540.89Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ZYMMO5.844e-4440.99Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ARATH9.968e-4440.44Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODBB_THET29.968e-4440.972-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODBB_BACSU1.700e-4339.642-oxoisovalerate dehydrogenase subunit beta OS=Bac... [more]
ODBB_THET82.221e-4340.972-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODPB_BOVIN1.439e-4238.22Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RAT1.591e-4136.89Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RICFE2.078e-4141.28Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionC32012A02EF RVDevelop1 Citrus clementina cDNA clone C32012A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920703 ID=FC920703; Name=FC920703; organism=Citrus clementina; type=EST; length=703bp
AGGGCACGAACTTTTTCCTTTTGAAGCTCTACGAGAAGGCTTGGAAGAAG
AAATGGACAGAGATCCACATGTATGTGTCATGGGTGAAGATGTTGGTCAC
TATGGGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGATAAGTATGGGGA
TCTCAGGGTTCTTGATACCCCTATTGCTGAGAACTCTTTCACTGGTATGG
GCATTGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTGAAGGAATGAAC
ATGGGATTTCTTCTTTTAGCTTTCAACCAGATCTCCAACAACTGTGGTAT
GCTCCACTATACTTCTGGTGGGCAGTTTACCATACCAATAGTTATCCGTG
GACCTGGTGGAGTTGGCCGACAACTTGGAGCTGAGCATTCCCAACGCCTT
GAGTCATATTTTCAATCAATCCCCGGAATTCAAATGGTGGCATGCTCGAC
CCCATACAATGCCAAGGGCTTGATGAAAGCTGCAATCCGAAGTGAGAACC
CAGTTATACTTTTCGAGCATGTGTTGCTTTACAACCTCAAGGAAAGGATT
CCAGATGAGGAATACATTTGTAATCTTGAGGAAGCTGAGATGGTTAGGCC
TGGGGAGCATGTCACTATTTTAACCTATTCTCGAATGAGGTATCATGTGA
TGCAAGCTGCTAAAACTTTGGTAAACAAGGGTATGATCCTGAGGTTATTG
ACA
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