FC920703

Overview
NameFC920703
Unique NameFC920703
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15198 contig Ccv1_Contig15198:447..1149. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_PONAB (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pongo abelii GN=PDHB PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.078e-41
Identity = 83/225 (36.89%), Postives = 139/225 (61.78%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGM 685
            +A+ +G++EE++RD  V ++GE+V  Y G+YKV++GL  KYGD R++DTPI+E  F G+ +GAAM GLRPI E M   F + A +Q+ N+    +Y SGG                 + A+HSQ   +++   PG+++V+     +AKGL+K+AIR  NPV++ E+ L+Y +    P E    +++  + +A++ R G H+T++++SR   H ++AA  L  +G+
Sbjct:   37 DAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGV 261          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_HUMAN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens GN=PDHB PE=1 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 2.078e-41
Identity = 83/225 (36.89%), Postives = 139/225 (61.78%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGM 685
            +A+ +G++EE++RD  V ++GE+V  Y G+YKV++GL  KYGD R++DTPI+E  F G+ +GAAM GLRPI E M   F + A +Q+ N+    +Y SGG                 + A+HSQ   +++   PG+++V+     +AKGL+K+AIR  NPV++ E+ L+Y +    P E    +++  + +A++ R G H+T++++SR   H ++AA  L  +G+
Sbjct:   37 DAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGV 261          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_MOUSE (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.545e-41
Identity = 83/225 (36.89%), Postives = 138/225 (61.33%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGM 685
            EA+ +G++EE++RD  V ++GE+V  Y G+YKV++GL  KYGD R++DTPI+E  F G+ +GAAM GLRPI E M   F + A +Q+ N+    +Y S G                 + A+HSQ   +++   PG+++V+     +AKGL+K+AIR  NPV++ E+ L+Y +   +P E    +++  + +A++ R G H+T++ +SR   H ++AA  L  +G+
Sbjct:   37 EAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVMLENELMYGVAFELPAEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGI 261          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_RHIME (Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti GN=pdhB PE=3 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 6.047e-41
Identity = 89/227 (39.21%), Postives = 138/227 (60.79%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPD-EEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGMILRLL 700
            EALR+ + EEM  +  V VMGE+V  Y G+YKVT+GL  ++G  RV+DTPI E+ F G+G+GAAMTGLRPIVE M   F + A +QI N+     Y SGGQ               ++ A+HSQ   +++  IPG+++V   T  +AKGL+KAAIR  NPVI  E+ +LY     +P  ++++  + +A + R G+  T++++     + ++AA  L  +G+ + ++
Sbjct:  142 EALRDAMAEEMRANEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVVDTPITEHGFAGVGVGAAMTGLRPIVEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGAPIVFRGPSGAAARVAAQHSQCYAAWYSHIPGLKVVMPYTAADAKGLLKAAIRDPNPVIFLENEILYGQSFEVPKLDDFVLPIGKARIHRTGKDATLVSFGIGMTYAIKAAAELEAQGIDVEII 368          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_RICTY (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia typhi GN=pdhB PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.347e-40
Identity = 86/203 (42.36%), Postives = 124/203 (61.08%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYS 631
            EALR+ ++EEM RD  V V+GE+V  Y G+YKVT+GL +++G  RV+DTPI E  F G+ +GAA  GLRPIVE M   F + AF+ I N+    HY SGGQ               ++ A+HSQ   + +  IPG+++VA  +  + KGLM  AIR +NPVI  E+ +LY     +PD        +A++++ G +VTI+T+S
Sbjct:    7 EALRDAMQEEMLRDDKVFVIGEEVAEYQGAYKVTQGLLEQFGSKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSFDVPDIIEPIPFSKAKILKEGSNVTIVTFS 209          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_RICPR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia prowazekii GN=pdhB PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.347e-40
Identity = 86/203 (42.36%), Postives = 124/203 (61.08%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYS 631
            EALR+ ++EEM RD  V V+GE+V  Y G+YKVT+GL +++G  RV+DTPI E  F G+ +GAA  GLRPIVE M   F + AF+ I N+    HY SGGQ               ++ A+HSQ   + +  IPG+++VA  +  + KGLM  AIR +NPVI  E+ +LY     +PD        +A++++ G +VTI+T+S
Sbjct:    7 EALRDAMQEEMLRDEKVFVIGEEVAEYQGAYKVTQGLLEQFGSKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSFDVPDIIEPIPFSKAKILKEGSNVTIVTFS 209          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_CAEEL (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.347e-40
Identity = 86/220 (39.09%), Postives = 133/220 (60.45%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTL 670
            +AL + ++EE+ RD  V +MGE+V  Y G+YK++KGL  K+GD RV+DTPI E  F G+ +GAA  GLRPI E M   F + A +QI N+    +Y S G+                + A+HSQ   +++   PG+++V   +  +AKGL+KAAIR +NPV+  E+ +LY     + DE    +++  + +A++ R G+HVTI++YSR     ++AAK L
Sbjct:   29 DALNQAMDEEIKRDDRVFLMGEEVAQYDGAYKISKGLWKKHGDKRVVDTPITEMGFAGIAVGAAFAGLRPICEFMTFNFSMQAIDQIINSAAKTYYMSAGRVPVPIVFRGPNGAAAGVAAQHSQDFSAWYAHCPGLKVVCPYSAEDAKGLLKAAIRDDNPVVFLENEILYGQSFPVGDEVLSDDFVVPIGKAKIERAGDHVTIVSYSRGVEFSLEAAKQL 248          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_YEAST (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 3.920e-40
Identity = 87/222 (39.19%), Postives = 132/222 (59.46%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLE---EAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK 679
            EAL   + EE+DRD  V ++GE+V  Y G+YKV+KGL D++G+ RV+DTPI E  FTG+ +GAA+ GL+PIVE M+  F + A + + N+    HY SGG                 +GA+HSQ    ++ SIPG++++   +  +A+GL+KAAIR  NPV+  E+ LLY     I +E          +A++ R G  ++I+TY+R     ++AA+ L  K
Sbjct:   43 EALNSAMAEELDRDDDVFLIGEEVAQYNGAYKVSKGLLDRFGERRVVDTPITEYGFTGLAVGAALKGLKPIVEFMSFNFSMQAIDHVVNSAAKTHYMSGGTQKCQMVFRGPNGAAVGVGAQHSQDFSPWYGSIPGLKVLVPYSAEDARGLLKAAIRDPNPVVFLENELLYGESFEISEEALSPEFTLPYKAKIEREGTDISIVTYTRNVQFSLEAAEILQKK 264          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_RICCN (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia conorii GN=pdhB PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.920e-40
Identity = 88/218 (40.37%), Postives = 127/218 (58.26%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVN 676
            EALR+ ++EEM RD  V V+GE+V  Y G+YKVT+GL +++G  RV+DTPI E  F G+ +GAA  GLRPIVE M   F + AF+ I N+    HY SGGQ               ++ A+HSQ   + +  IPG+++VA  +  + KGLM  AIR +NPV+  E+ +LY     +P         +A+++R G  VTI+T+S      + AA  + N
Sbjct:    7 EALRDAMQEEMIRDDKVFVIGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVVFLENEILYGHSFDVPKTIEPIPFGQAKILREGSSVTIVTFSIQVKLALDAANFVQN 224          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ACOB_RALEH (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoB PE=1 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 3.920e-40
Identity = 91/230 (39.57%), Postives = 132/230 (57.39%), Query Frame = 2
Query:   26 ALREGLEEEMDRDPHVCVMGEDV----------GHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGM 685
            A+ E +++EM RDP V ++GED+            +GG   VTKGL  K+GD R+LDTP++E+++ G  IGAA  G+RPI E M + F+ + F+QI N      Y  GG+               +  A+HSQ L   F  IPG+++V  STPY+ KGL+  AIR  +PVI  EH  LY L+  +P+  Y     EA +VR G+ V+I+TY  M +  ++AA TL  +G+
Sbjct:   10 AINEAIDQEMTRDPSVIMLGEDIVGGAGADGEKDAWGGVLGVTKGLYAKHGD-RLLDTPLSESAYVGAAIGAAACGMRPIAELMFIDFMGVCFDQIFNQAAKFRYMFGGKAETPVVIRAMVGAGFRAAAQHSQMLTPLFTHIPGLKVVCPSTPYDTKGLLIQAIRDNDPVIFCEHKNLYGLEGEVPEGAYAIPFGEANIVRDGKDVSIVTYGLMVHRALEAAATLAKEGI 238          
The following BLAST results are available for this feature:
BLAST of FC920703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_PONAB2.078e-4136.89Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_HUMAN2.078e-4136.89Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_MOUSE3.545e-4136.89Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RHIME6.047e-4139.21Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICTY1.347e-4042.36Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICPR1.347e-4042.36Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CAEEL1.347e-4039.09Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_YEAST3.920e-4039.19Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RICCN3.920e-4040.37Pyruvate dehydrogenase E1 component subunit beta O... [more]
ACOB_RALEH3.920e-4039.57Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]

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Properties
Property NameValue
Genbank descriptionC32012A02EF RVDevelop1 Citrus clementina cDNA clone C32012A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920703 ID=FC920703; Name=FC920703; organism=Citrus clementina; type=EST; length=703bp
AGGGCACGAACTTTTTCCTTTTGAAGCTCTACGAGAAGGCTTGGAAGAAG
AAATGGACAGAGATCCACATGTATGTGTCATGGGTGAAGATGTTGGTCAC
TATGGGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGATAAGTATGGGGA
TCTCAGGGTTCTTGATACCCCTATTGCTGAGAACTCTTTCACTGGTATGG
GCATTGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTGAAGGAATGAAC
ATGGGATTTCTTCTTTTAGCTTTCAACCAGATCTCCAACAACTGTGGTAT
GCTCCACTATACTTCTGGTGGGCAGTTTACCATACCAATAGTTATCCGTG
GACCTGGTGGAGTTGGCCGACAACTTGGAGCTGAGCATTCCCAACGCCTT
GAGTCATATTTTCAATCAATCCCCGGAATTCAAATGGTGGCATGCTCGAC
CCCATACAATGCCAAGGGCTTGATGAAAGCTGCAATCCGAAGTGAGAACC
CAGTTATACTTTTCGAGCATGTGTTGCTTTACAACCTCAAGGAAAGGATT
CCAGATGAGGAATACATTTGTAATCTTGAGGAAGCTGAGATGGTTAGGCC
TGGGGAGCATGTCACTATTTTAACCTATTCTCGAATGAGGTATCATGTGA
TGCAAGCTGCTAAAACTTTGGTAAACAAGGGTATGATCCTGAGGTTATTG
ACA
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