FC920703

Overview
NameFC920703
Unique NameFC920703
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15198 contig Ccv1_Contig15198:447..1149. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_STAAM (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhB PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.434e-36
Identity = 77/227 (33.92%), Postives = 129/227 (56.83%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGMILRLL 700
            +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+ I+       + SGG  T                  H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M    M+AA+ L   G  + ++
Sbjct:    8 QAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVI 234          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_STAAC (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain COL) GN=pdhB PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.434e-36
Identity = 77/227 (33.92%), Postives = 129/227 (56.83%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGMILRLL 700
            +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+ I+       + SGG  T                  H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M    M+AA+ L   G  + ++
Sbjct:    8 QAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRGPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVI 234          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_STAES (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.650e-36
Identity = 75/227 (33.04%), Postives = 131/227 (57.71%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGMILRLL 700
            +A+ + L+ E+ RD  V V GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+TG RP++E   +GF+   F++++       + SGG                     H+  LE      PG+++V  S PY+AKGL+ ++I+S +PV+  EH+ LY + +E +P+EEY  ++ +A + + G  +T+++Y  M    ++AA+ L   G  + ++
Sbjct:    8 QAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLAVTGFRPVMEIQFLGFVYEVFDEVAGQIARTRFRSGGTKPAPVTIRTPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQSNDPVVYLEHMKLYRSFREEVPEEEYKIDIGKANVKKEGNDITLISYGAMVQESLKAAEELEKDGYSVEVI 234          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_STAEQ (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.650e-36
Identity = 75/227 (33.04%), Postives = 131/227 (57.71%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGMILRLL 700
            +A+ + L+ E+ RD  V V GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+TG RP++E   +GF+   F++++       + SGG                     H+  LE      PG+++V  S PY+AKGL+ ++I+S +PV+  EH+ LY + +E +P+EEY  ++ +A + + G  +T+++Y  M    ++AA+ L   G  + ++
Sbjct:    8 QAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLAVTGFRPVMEIQFLGFVYEVFDEVAGQIARTRFRSGGTKPAPVTIRTPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQSNDPVVYLEHMKLYRSFREEVPEEEYKIDIGKANVKKEGNDITLISYGAMVQESLKAAEELEKDGYSVEVI 234          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_BACST (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus stearothermophilus GN=pdhB PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 9.991e-36
Identity = 77/222 (34.68%), Postives = 125/222 (56.31%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGM 685
            +A+ + L  E+  DP+V + GEDVG  GG ++ T+GL  ++G+ RV DTP+AE+   G+ IG A+ G RP+ E    GF+    + I      + Y +GG++                   HS  LE      PG+++V  STPY+AKGL+ +AIR  +PVI  EH+ LY + ++ +P+ EY   + +A++ R G+ +TI+ Y  M +  ++AA  L  +G+
Sbjct:    8 QAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSFRQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGI 229          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_ACHLA (Pyruvate dehydrogenase E1 component subunit beta OS=Acholeplasma laidlawii GN=pdhB PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.991e-36
Identity = 78/227 (34.36%), Postives = 128/227 (56.39%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL-KERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGMILRLL 700
            EA+ + +++ M++D  + V GED G  GG ++VT GL  KYG+ RV DTPIAE++  G  +G A+ GL+PI E    GF+   +  +  +   +   S GQFT             +    HS+ LE  F SIPG+++V  STPY+AKGL+ AAI   +PV+  E   +Y   K+ +P E Y   + +A++V+ G  +T++ +  +   V +A K +  +G+ + ++
Sbjct:    8 EAINQAIDQAMEKDESIVVFGEDAGFEGGVFRVTAGLQKKYGETRVFDTPIAESAIVGSAVGMAINGLKPIAEIQFDGFIFPGYTDLVTHAARMRNRSRGQFTVPMVLRLPHGGGIRALEHHSEALEVLFGSIPGLKVVTPSTPYDAKGLLLAAINDPDPVVFLEPKRIYRAGKQEVPAEMYEIPIGKAKVVKQGTDMTVVAWGSIVREVEKAVKLVEAEGISVEII 234          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ACOB_BACSU (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Bacillus subtilis GN=acoB PE=3 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 4.198e-34
Identity = 84/238 (35.29%), Postives = 123/238 (51.68%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGH------------YGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGMILRLL 700
            +A+ E ++  M +D +V ++GEDV              +GG   VTKGL  ++G  RVLDTPI+E  + G  + AA TGLRPI E M   F+   F+Q+ N      Y  GG+               +  A+HSQ L   F SIPG++ V  S PY+AKGL+ AAI   +PV  FE    YN+K  +P++ Y   L +A++ R G  VT+    +     ++AA  L  +G+   +L
Sbjct:    9 DAINEAMKLAMRKDENVLLIGEDVAGGAAVDHLQDDEAWGGVLGVTKGLVQEFGRTRVLDTPISEAGYMGAAMAAASTGLRPIAELMFNDFIGTCFDQVINQGAKFRYMFGGKAQVPITVRTTYGAGFRAAAQHSQSLYGLFTSIPGLKTVVPSNPYDAKGLLLAAIEDNDPVFFFEDKTSYNMKGEVPEDYYTIPLGKADIKREGNDVTLFAVGKQVNTALEAAAQLSERGIEAEVL 246          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODBB_DICDI (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Dictyostelium discoideum GN=bkdB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.083e-33
Identity = 84/222 (37.84%), Postives = 117/222 (52.70%), Query Frame = 2
Query:   20 FEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAE-HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK 679
            F+A+  G++  M +D    V GEDVG +GG ++ T GL DKYG  RV +TP+ E    G  IG A  G  PI E     ++  AF+QI N      Y SGGQF                G   HSQ  ESYF   PG+++V  STP  AKGL+ A+IR ++PVI FE  L+Y +  E +P  +Y   L +A +V+ G+ +TI+ +      ++QA      K
Sbjct:   52 FQAINNGMDIAMQKDSKAVVFGEDVG-FGGVFRCTVGLRDKYGASRVFNTPLCEQGIAGFAIGLAAQGATPIAEIQFADYIFPAFDQIVNEAAKYRYRSGGQFDCGSLTIRSPYGAVGHGGHYHSQSPESYFGHTPGLKVVIPSTPIEAKGLLLASIREKDPVIFFEPKLMYRSAVEEVPIGDYEIPLGKARIVKEGKDITIIGWGAQMRVLLQAVNMAEEK 272          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.721e-33
Identity = 83/226 (36.73%), Postives = 122/226 (53.98%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN-LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKT--LVNKGMIL 691
            EAL   ++  ++RD +V + G+D G  GG ++ TKGL  KYG  RV D PIAENS  G+G+GAA+ GL+PIVE    GF   A  QI  +   +   S G +T             +    HS+ LE+ +  I G++ V  S PY+ KGL  AAI S +PVI FE   LY   ++ IP + Y   + EA ++  G  +TI++Y    + ++    +  L +KG+ L
Sbjct:   10 EALNNAMDLALERDQNVVLYGQDAGFEGGVFRATKGLQQKYGSERVWDCPIAENSMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFVHAARIRNRSRGVYTAPLVVRMPMGGGIKALEHHSETLEAIYAQIAGLKTVMPSNPYDTKGLFLAAIESPDPVIFFEPKKLYRAFRQEIPSDYYTVPIGEANLISEGSELTIVSYGPTMFDLINLVYSGELKDKGIEL 235          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODBB_PSEAE (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa GN=bkdA2 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.034e-32
Identity = 83/230 (36.09%), Postives = 119/230 (51.74%), Query Frame = 2
Query:   23 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN-----------------LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAA 661
            +ALR  ++  ++RD  V V G+DVG++GG ++ T+GL  KYG  RV D PI+E+   G  +G    GLRP+VE     ++  A +Q+ +    L Y S G F                G  HSQ  E+ F  + G++ V  S PY+AKGL+ A I +++PVI  E   LYN                    ++PD  Y   L++A +VRPG  +T+LTY  M Y V QAA
Sbjct:   21 QALRSAMDIMLERDDDVVVFGQDVGYFGGVFRCTEGLQKKYGTSRVFDAPISESGIIGAAVGMGAYGLRPVVEIQFADYVYPASDQLISEAARLRYRSAGDFIVPMTVRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIACIENDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPASQVPDGYYKVPLDKAAIVRPGAALTVLTYGTMVY-VAQAA 249          
The following BLAST results are available for this feature:
BLAST of FC920703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_STAAM3.434e-3633.92Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAC3.434e-3633.92Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAES7.650e-3633.04Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAEQ7.650e-3633.04Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BACST9.991e-3634.68Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ACHLA9.991e-3634.36Pyruvate dehydrogenase E1 component subunit beta O... [more]
ACOB_BACSU4.198e-3435.29Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODBB_DICDI2.083e-3337.842-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODPB_MYCGE2.721e-3336.73Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_PSEAE1.034e-3236.092-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]

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Properties
Property NameValue
Genbank descriptionC32012A02EF RVDevelop1 Citrus clementina cDNA clone C32012A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920703 ID=FC920703; Name=FC920703; organism=Citrus clementina; type=EST; length=703bp
AGGGCACGAACTTTTTCCTTTTGAAGCTCTACGAGAAGGCTTGGAAGAAG
AAATGGACAGAGATCCACATGTATGTGTCATGGGTGAAGATGTTGGTCAC
TATGGGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGATAAGTATGGGGA
TCTCAGGGTTCTTGATACCCCTATTGCTGAGAACTCTTTCACTGGTATGG
GCATTGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTGAAGGAATGAAC
ATGGGATTTCTTCTTTTAGCTTTCAACCAGATCTCCAACAACTGTGGTAT
GCTCCACTATACTTCTGGTGGGCAGTTTACCATACCAATAGTTATCCGTG
GACCTGGTGGAGTTGGCCGACAACTTGGAGCTGAGCATTCCCAACGCCTT
GAGTCATATTTTCAATCAATCCCCGGAATTCAAATGGTGGCATGCTCGAC
CCCATACAATGCCAAGGGCTTGATGAAAGCTGCAATCCGAAGTGAGAACC
CAGTTATACTTTTCGAGCATGTGTTGCTTTACAACCTCAAGGAAAGGATT
CCAGATGAGGAATACATTTGTAATCTTGAGGAAGCTGAGATGGTTAGGCC
TGGGGAGCATGTCACTATTTTAACCTATTCTCGAATGAGGTATCATGTGA
TGCAAGCTGCTAAAACTTTGGTAAACAAGGGTATGATCCTGAGGTTATTG
ACA
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