FC920704

Overview
NameFC920704
Unique NameFC920704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4062 contig Ccv1_Contig4062:10..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920704 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.237e-58
Identity = 106/200 (53.00%), Postives = 136/200 (68.00%), Query Frame = 2
Query:  119 GSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLP----GQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSA 706
            G G   G    G G  GG +  ++S+E+FE LL +RND  C ARGFYTYDA + AA AFP F  +G++  RKRE+AAF  QT HETTGGW  AP G Y+WGYC+  ++  G+           P     +Y+GRGPIQL++N NY   GEA+G DLLNNP+L+A+DPV+SFK+A+WFWMT Q PKPSCH+VI  +W PS+
Sbjct:   67 GGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEI--GATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSS 264          
BLAST of FC920704 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.103e-57
Identity = 100/183 (54.64%), Postives = 129/183 (70.49%), Query Frame = 2
Query:  161 TDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSA 706
            T GG++G+++   +F+ +L YRND RC   GFYTYDAFI AA++F  FG +G++  +K+E+AAF AQT HETTGGWP AP G YAWGYC++ + +              PG +YYGRGPIQLT N NY   G+A+  DL+NNPDLL+T+P +SFK+AIWFWMT Q  KPS H+VI   W PSA
Sbjct:   75 TGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSA 257          
BLAST of FC920704 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.747e-57
Identity = 112/214 (52.34%), Postives = 139/214 (64.95%), Query Frame = 2
Query:   98 GGSAQNCGSG-----AVCGE-----RDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD-XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPS 703
            G ++  CG G     A CG        T   + GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   RKRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    S+           PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS
Sbjct:   44 GSTSDYCGDGCQSQCAGCGGGGTPVTPTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPS 257          
BLAST of FC920704 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 4.685e-57
Identity = 107/215 (49.77%), Postives = 141/215 (65.58%), Query Frame = 2
Query:   98 GGSAQNCGSGAV------CGERDTGHGTDGGE-LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLP----GQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAN 709
            G ++  CG+G        CG   T   + GG  +  IIS  +F+ +L +RND+ C A+GFYTYDAF+ AA A+P F  +G+    KRE+AAF AQT HETTGGWP AP G Y+WGYC+ ++ ++G+           P     +YYGRGPIQ+T+N NY   G+A+G DLLNNPDL+A+D  +SFK+A WFWMT Q PKPSCH VI  +W PSA+
Sbjct:   43 GSTSDYCGAGCQSQCSGGCGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCF-KEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSAD 256          
BLAST of FC920704 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.991e-57
Identity = 105/184 (57.07%), Postives = 127/184 (69.02%), Query Frame = 2
Query:  158 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD-XXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPS 703
            GT  G +  I+SR  F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   +KRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    SD           PG +YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATD  + FK+AIWFWMTAQPPKPS H VI  +W PS
Sbjct:   19 GTARGSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPS 202          
BLAST of FC920704 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 219.935 bits (559), Expect = 1.044e-56
Identity = 111/213 (52.11%), Postives = 137/213 (64.32%), Query Frame = 2
Query:  101 GSAQNCGSGAVCGERDTGHG----------TDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD-XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPS 703
            GS   CG G  C  + +G G          + GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AF  FG +G    RKRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    S+           PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS
Sbjct:   44 GSTPYCGDG--CQSQCSGCGGGSTPVTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPS 254          
BLAST of FC920704 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.363e-56
Identity = 112/214 (52.34%), Postives = 142/214 (66.36%), Query Frame = 2
Query:   98 GGSAQNCGSGAVCGERDTGHG----------TDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD-XXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPS 703
            G ++  CG G  C  + +G G          +DG  +G I+ R++FE LL +RND  C ARGFYTY+AF+ AA AFPAFG +GN   RKRE+AAF  QT HETTGGWP AP G ++WGYC+ ++ +  SD           PG +YYGRGPIQL++N NY   G A+GVDLL+NPDL+ATD  +SFK+A+WFWMT Q  KPS H+VI   W PS
Sbjct:   57 GTTSDFCGDG--CQSQCSGCGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPS 266          
BLAST of FC920704 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.325e-56
Identity = 104/184 (56.52%), Postives = 127/184 (69.02%), Query Frame = 2
Query:  158 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD-XXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPS 703
            GT  G +  IIS   F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   RKR++AAF AQT HETTGGW  AP G +AWGYC+ ++    +D           PG +YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS
Sbjct:   19 GTAHGSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPS 202          
BLAST of FC920704 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.507e-55
Identity = 98/178 (55.06%), Postives = 127/178 (71.35%), Query Frame = 2
Query:  176 LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAN 709
            +G II+R MFE +L +R D+ C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT HETTGGW  AP G +AWGYC + +++                 YYGRGPIQLT   NY   G+ALG+DL+NNPDL+++DPV++F++AIWFWMTAQ PKPSCH+VI ++W PS +
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDPP------------YYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGD 191          
BLAST of FC920704 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.357e-55
Identity = 101/178 (56.74%), Postives = 125/178 (70.22%), Query Frame = 2
Query:  176 LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPS 703
            +  +IS+ +FE +L +RND  C A+GFYTY+AFI A K F AFG +G+   R +EIAAF AQT HETTGGW  AP G Y+WGYCY R Q S G            PG +Y+GRGPIQ+++N NY   G A+GV+LLNNPDL+A D V+SFK+A+WFWMTAQ PKPS H+VI   W PS
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPS 182          
The following BLAST results are available for this feature:
BLAST of FC920704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI9_ORYSJ4.237e-5853.00Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIX_PEA2.103e-5754.64Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIA_SECCE2.747e-5752.34Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI3_ORYSJ4.685e-5749.77Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_HORVU7.991e-5757.0726 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_HORVU1.044e-5652.1126 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI2_ORYSJ1.363e-5652.34Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIC_SECCE2.325e-5656.52Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI11_ORYSJ1.507e-5555.06Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHID_SOLLC3.357e-5556.74Basic endochitinase (Fragment) OS=Solanum lycopers... [more]

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Properties
Property NameValue
Genbank descriptionC32012A04EF RVDevelop1 Citrus clementina cDNA clone C32012A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920704 ID=FC920704; Name=FC920704; organism=Citrus clementina; type=EST; length=709bp
GACCCAAGTAAAGGATAATTGATATCATAACTCTTGCTTTCAAATGAGGC
TCATTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTACAAGGA
GGTTCAGCACAGAATTGTGGAAGCGGCGCTGTGTGCGGTGAACGTGATAC
TGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGA
TGTTTGAAGACTTGCTTCCGTATAGAAATGATGAACGATGCCATGCCAGA
GGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGC
CTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCT
TTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCT
GGTGGAGAATATGCTTGGGGATATTGCTATATTAGGCAAGTTAGCCATGG
GTCCGACTACTGTTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACT
ATGGCCGAGGTCCAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGC
GGAGAAGCCTTGGGGGTGGACTTGTTGAACAATCCAGACCTTCTTGCCAC
TGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCAC
AGCCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCA
TCAGCAAAT
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