FC920704

Overview
NameFC920704
Unique NameFC920704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920704 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.114e-45
Identity = 83/186 (44.62%), Postives = 118/186 (63.44%), Query Frame = 2
Query:  152 GHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD--XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKP 700
            G+      +  I+S +++  L  +++D  C ARGFYTY +F+ AA  FP F  +G    RKRE+AAF AQ  HETTGGW  AP G YAWG CY  +++  S             PG+ Y+GRGPIQ++WN NY   G+ALG D L NP+++A    ++F++A+WFWMT +  KPSCH+V++ E++P
Sbjct:   41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRP 226          
BLAST of FC920704 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.373e-45
Identity = 84/174 (48.28%), Postives = 110/174 (63.22%), Query Frame = 2
Query:  191 SREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLP--GQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPS 703
            +  MFE +LP RN++ C  +GFYTYDA+  A + +P FG +G++  RKRE+AAFFAQT  ET+G         + WGYC + +++  SD          P    YYGRGP+QL WN NY  CG  LG +LL+ P+ +ATDPVLSF++A+WFWM       PSCHEVI  EW PS
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPS 241          
BLAST of FC920704 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.758e-44
Identity = 87/177 (49.15%), Postives = 110/177 (62.15%), Query Frame = 2
Query:  176 LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSA 706
            +  +IS  +FE +L +R        GFYTYDAFI AAK+FPAF  +G+  +RKRE+AAF AQT HETTGGWP AP G Y  G                         Y+GRGPIQ+++N NY   G+A+GVDLL NPDL+ +D  + FK+A+WFWMT Q PKPS H+VI   W PS+
Sbjct:    1 VSSVISSSLFEKMLLHR--------GFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELGST---------------------SDYFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSS 148          
BLAST of FC920704 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 91/212 (42.92%), Postives = 124/212 (58.49%), Query Frame = 2
Query:   95 QGGSAQNCGSGAVCGERD------TGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD-XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPS 703
            +GG    C      G+ D      T  G     +  +++ + FE +LP+R+D  C ARGFY Y AF+ AA AFPAF  +G+   RKRE+AAF AQT H T+       GG Y+WGYCY       SD           PG+ Y+ RGP+Q+ +N NY   GEA+G DLL NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+
Sbjct:   64 KGGCQSQCRVSRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPT 268          
BLAST of FC920704 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 91/212 (42.92%), Postives = 124/212 (58.49%), Query Frame = 2
Query:   95 QGGSAQNCGSGAVCGERD------TGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD-XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPS 703
            +GG    C      G+ D      T  G     +  +++ + FE +LP+R+D  C ARGFY Y AF+ AA AFPAF  +G+   RKRE+AAF AQT H T+       GG Y+WGYCY       SD           PG+ Y+ RGP+Q+ +N NY   GEA+G DLL NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+
Sbjct:   64 KGGCQSQCRVSRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPT 268          
BLAST of FC920704 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 8.598e-35
Identity = 78/201 (38.81%), Postives = 117/201 (58.21%), Query Frame = 2
Query:   98 GGSAQNCGSGAVCGERD--TGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVS-HGSDXXXXXXXXXLPGQYYG-RGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIID 688
            G   Q   S +V G R   +G+ T       +++  +F+ +  +R D  C ++GFY+Y +F+ AA++FPAFG  G+   RKRE+AAF A     T+G   D     +AWG C+I   +   +D           G+ Y  RGPIQLT N NY   G+A+G DL+ NPDL+  DP++SFK+A+WFWM+    KPSCH+++++
Sbjct:  102 GSKCQYRCSSSVRGPRVALSGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVEN-PHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVLN 299          
BLAST of FC920704 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.570e-28
Identity = 69/185 (37.30%), Postives = 100/185 (54.05%), Query Frame = 2
Query:   98 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFW 640
            G  +  CG+G   G  D    T+   +  I++ E F  L+  + D+ C A+GFYT DAF+ AA  +P+FG +G+    KREIAAFFA   HET               +CYI ++   S           P      YYGRGP+Q++WN NY   G+++G D L +PD +A  PVL+F++A+W+W
Sbjct:   43 GTGSDYCGTGCQAGPCDVP-ATNDVSVASIVTPEFFAALVA-QADDGCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETIK-------------FCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYW 212          
BLAST of FC920704 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.244e-25
Identity = 63/192 (32.81%), Postives = 95/192 (49.48%), Query Frame = 2
Query:   98 GGSAQNCGSGAVCGERDTGHGTDGG-----ELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGS---DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTA 649
            G + + CG G   G   +G G  G       +  +++   F  +   +    C  + FYT  AF+ A K +P F + G++   KREIAAFFA   HET               +CYI +++  +   D            +YYGRGP+Q++WN NY   G A+G D L +P  +A D V++FK+A+WFWM +
Sbjct:   38 GTTDEYCGDGCQSGPCRSGRGGGGSGGGGANVASVVTSSFFNGI-KNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGH-------------FCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNS 215          
BLAST of FC920704 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.244e-25
Identity = 66/195 (33.85%), Postives = 100/195 (51.28%), Query Frame = 2
Query:   98 GGSAQNCGSGAVCGERDTGHGTD----GGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPP 658
            G +   CG+G   G   +  GT     GG +G I+++  F  ++       C  + FYT D+FI AA  FP F NS    + +REIA  FA   HET               +CYI +++  S           P      Y+GRGPIQL+WN NY  CG++L ++LL  P+L++++P ++F++ +WFWM +  P
Sbjct:   42 GSTDAYCGTGCRSGPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGGG-CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHETGH-------------FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP 218          
BLAST of FC920704 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.066e-25
Identity = 73/191 (38.22%), Postives = 94/191 (49.21%), Query Frame = 2
Query:  113 NCGSGAVCGERDT-----------GHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWP-DAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMT 646
            NC SG   G   T           G G  G  +  I+S+  F+ ++  +    C  + FYT  AF+ A    P FGN G+    KREIAAFFA   HETT     +   G+    YC         D           G+ YYGRGP+QL+WN NY   G+A+G D L NP+ +ATD   SFK+A+WFWMT
Sbjct:   55 NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTNLCHIEERDGDVGDAYC---------DQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT 233          
The following BLAST results are available for this feature:
BLAST of FC920704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI10_ORYSJ4.114e-4544.62Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI8_POPTR5.373e-4548.28Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIT_AVESA7.758e-4449.15Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI7_ORYSJ5.029e-4342.92Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI5.029e-4342.92Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
AGI_URTDI8.598e-3538.81Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI6_ORYSJ1.570e-2837.30Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_MAIZE1.244e-2532.81Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_BRANA1.244e-2533.85Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIP_BETVU8.066e-2538.22Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]

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Properties
Property NameValue
Genbank descriptionC32012A04EF RVDevelop1 Citrus clementina cDNA clone C32012A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920704 ID=FC920704; Name=FC920704; organism=Citrus clementina; type=EST; length=709bp
GACCCAAGTAAAGGATAATTGATATCATAACTCTTGCTTTCAAATGAGGC
TCATTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTACAAGGA
GGTTCAGCACAGAATTGTGGAAGCGGCGCTGTGTGCGGTGAACGTGATAC
TGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGA
TGTTTGAAGACTTGCTTCCGTATAGAAATGATGAACGATGCCATGCCAGA
GGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGC
CTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCT
TTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCT
GGTGGAGAATATGCTTGGGGATATTGCTATATTAGGCAAGTTAGCCATGG
GTCCGACTACTGTTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACT
ATGGCCGAGGTCCAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGC
GGAGAAGCCTTGGGGGTGGACTTGTTGAACAATCCAGACCTTCTTGCCAC
TGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCAC
AGCCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCA
TCAGCAAAT
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