FC920706

Overview
NameFC920706
Unique NameFC920706
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920706 vs. ExPASy Swiss-Prot
Match: LCMT1_BOVIN (Leucine carboxyl methyltransferase 1 OS=Bos taurus GN=LCMT1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 62/180 (34.44%), Postives = 89/180 (49.44%), Query Frame = 3
Query:   96 SQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVR-RPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTAS--ISQAKGEVL-GDNYKLLPVDLRDIQMLNEVINLANMDPRM 623
            + ++   V+ T +DAS  K   V  GY +D YI   VR    R++P INRGYFAR   + +L   FL       +K     QIL+LGAG DTT++ L+ E   P  Y E+DF  + ++K   I+    L   +    S    Q  G +L    Y ++  DLRDI  L E +   NM  ++
Sbjct:   17 TDTDDEGVRGTCEDASICKRFAVSIGYWQDPYIQHLVRLSKERKAPEINRGYFARVHGVSQLTKAFL-------RKTECNCQILNLGAGMDTTFWMLKDEDLLPRKYFEIDFPMIVTRKLHSIKLKPLLSKPILDLHSEDTLQMDGHMLDSTRYAIIGADLRDIADLEEKLKKCNMSTQL 189          
BLAST of FC920706 vs. ExPASy Swiss-Prot
Match: LCMT1_CRYNE (Leucine carboxyl methyltransferase 1 OS=Cryptococcus neoformans GN=PPM1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.519e-16
Identity = 52/170 (30.59%), Postives = 82/170 (48.24%), Query Frame = 3
Query:  138 ASASKLSCVKKGYMKDDYIHLFVRRPV--------------RRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHL--YVELDFIEVTSKKAALIETHGELKDKVGVTA----------SISQAKGEVLGDNYKLLPVDLR 569
            A  ++ S  + GY++D +  L  R P+              R+ P+IN G   R   + RL+ +FL  G          KQ++SLGAG DT +++L +    P L  YVE+DF  +TS KA  I  H +L   +G ++          ++S+   ++    Y LLP+DLR
Sbjct:   67 ALTTRSSAAQLGYLQDPFASLLYRPPMPQPGAFAPQAVGRARKPPLINVGTHHRTWGIDRLVDRFLQRGG---------KQVVSLGAGSDTRFWRLMSRATPPDLARYVEIDFPHLTSPKAQRIARHRKLYQYLGPSSTAMPPPGHPYTVSKGGTQLSSPLYTLLPLDLR 227          

HSP 2 Score: 35.039 bits (79), Expect = 9.519e-16
Identity = 12/31 (38.71%), Postives = 21/31 (67.74%), Query Frame = 1
Query:  607 IWIQECVLIYLDPDSSRAIVGWASKTFHSCI 699
            +++ EC+  Y+ P+ SR I+ W  +TF SC+
Sbjct:  256 LFLAECLFPYMSPEDSREIIKWFGETFCSCM 286          
BLAST of FC920706 vs. ExPASy Swiss-Prot
Match: LCMT1_YARLI (Leucine carboxyl methyltransferase 1 OS=Yarrowia lipolytica GN=PPM1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.101e-15
Identity = 62/178 (34.83%), Postives = 88/178 (49.44%), Query Frame = 3
Query:  117 VQATNDDASASKLSCVKKGYMKDDYIHLFV---------------RRPVR----RSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQL---QAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLG---DNYKLLPVDLRDI 575
            VQ+T+ DA +SK S V+KGY++D++I LFV               R+ V     + P+INRG F R  A+  L+ +FL       KK   + QI+SLGAG DT  F L   + E +   LY E+DF     +K  +I     L++ VG     +Q   +  G     Y L  +DLR I
Sbjct:    9 VQSTDGDALSSKYSAVQKGYLQDEFIDLFVAGSKQAAAQQGPGSARKVVAQFQPKLPLINRGTFVRHHAIDVLVDRFL-----AAKKPGQRVQIISLGAGSDTRPFSLWSSKPENRDEILYHEIDFAVSVERKRDIIMQDSTLRELVG-----AQEYDKTTGMHTQRYHLHGIDLRSI 176          

HSP 2 Score: 30.4166 bits (67), Expect = 2.101e-15
Identity = 10/25 (40.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  613 IQECVLIYLDPDSSRAIVGWASKTF 687
            I EC L YL+PD ++ ++ W +  F
Sbjct:  194 ISECCLCYLEPDQAKQVIFWITSEF 218          
BLAST of FC920706 vs. ExPASy Swiss-Prot
Match: LCMT2_ASPFU (Leucine carboxyl methyltransferase 2 OS=Aspergillus fumigatus GN=ppm2 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.135e-14
Identity = 54/180 (30.00%), Postives = 90/180 (50.00%), Query Frame = 3
Query:   84 PVADSQSNKAAVQA-----TNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGK---APHLYVELDFIE-VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVI 596
            P A   S KA  +A     TN+ +  SK S     Y K  +   FV+RP RRSP+INRGY+ R  A+   + QF+   SD        K +L+LG GFD   F L +  K   +   +V++D+ + + +KK A+  T    +    V     ++  ++  + Y  +  DL++++ L++V+
Sbjct:    7 PAAAGVSTKAEREADLVMETNNSSIVSKRSVELLYYPKPHFFRYFVKRPPRRSPLINRGYWLRMHAMAESVRQFMKQPSD------KPKFVLNLGCGFDPLPFILLSTDKSLCSTTRFVDIDYEKLMVNKKTAIRRTDEITRLLENVEFLSDESPIQIRSEQYLAIGCDLKNLKKLDDVL 180          

HSP 2 Score: 27.7202 bits (60), Expect = 6.135e-14
Identity = 10/26 (38.46%), Postives = 18/26 (69.23%), Query Frame = 1
Query:  604 LIWIQECVLIYLDPDSSRAIVGWASK 681
            ++++ E  L Y+D  S+ A++ WASK
Sbjct:  191 ILFLAEVSLTYMDVKSANAVLAWASK 216          
BLAST of FC920706 vs. ExPASy Swiss-Prot
Match: LCMT1_SCHPO (Leucine carboxyl methyltransferase 1 OS=Schizosaccharomyces pombe GN=ppm1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.952e-13
Identity = 50/155 (32.26%), Postives = 79/155 (50.97%), Query Frame = 3
Query:  117 VQATNDDASASKLSCVKKGYMKDDYIHLFV-RRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHL-YVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDI 575
            +  T+ DA   + S  K GY+ D +I  F   R   + PIINRG + R  ++  +L +F++   DG      KKQI+SLGAG DT  F+  +E    +L ++E DF     +K   IE H  LK  +G    +  + G ++  +  +   D+R+I
Sbjct:    3 ITETDLDALKCRSSATKSGYIHDPFIKFFSPSRNSHKPPIINRGTYVRTWSIDHILQKFIE-SFDG------KKQIISLGAGTDTRVFRYISEYGPENLKFIEFDFYPNCIRKIRTIEKHEALKQNIG-DYVVDISGGSLVSGSLDIYSYDIREI 149          

HSP 2 Score: 25.7942 bits (55), Expect = 3.952e-13
Identity = 9/27 (33.33%), Postives = 15/27 (55.56%), Query Frame = 1
Query:  607 IWIQECVLIYLDPDSSRAIVGWASKTF 687
            I + EC L YL+P+ + ++  W    F
Sbjct:  165 IVLSECCLCYLEPEEASSLCRWFQNMF 191          
BLAST of FC920706 vs. ExPASy Swiss-Prot
Match: LCMT1_NEUCR (Leucine carboxyl methyltransferase 1 OS=Neurospora crassa GN=ppm-1 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 50/147 (34.01%), Postives = 79/147 (53.74%), Query Frame = 3
Query:   96 SQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRR---PVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQL-QAEGKAPH---LYVELDFIEVTSKKAALIETHGELKDKVGVTASISQ 515
            S ++ A +Q T+ DA+ S+LS V+ GY+ D Y  LF +      RR PIINRG +AR  A+ +L+ +FL    D  +     +QI+SLGAG DT   +L       P    +Y E+DF  +  KK  ++ +  +L+  +    S+ +
Sbjct:   47 SAAHDATIQGTDTDAAVSRLSAVQIGYIDDPYAELFAQSGPGAARRLPIINRGTYARTTAIDKLVDKFL----DDTESSPEGRQIVSLGAGTDTRSLRLFSPSAPTPRKRVIYHEIDFPAMCEKKQRIVCSAPQLRSILSDPDSVEE 189          
BLAST of FC920706 vs. ExPASy Swiss-Prot
Match: LCMT2_CANAL (Leucine carboxyl methyltransferase 2 OS=Candida albicans GN=PPM2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 51/178 (28.65%), Postives = 93/178 (52.25%), Query Frame = 3
Query:  117 VQATNDDASASKLSCVKKGYMK------DDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPH--LYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVIN---LANMDP 617
            VQ TN+ +  SK S V+K Y +       ++   FV +  RRSP INRGY+ R  ++R+++ + +   S      + +  +++LG GFD   FQL +  K  +   ++++D+ ++   K  +I+   E+K  +G   S S     +  DNY+L+  DL+++    E++      N+DP
Sbjct:   33 VQGTNNSSIVSKRS-VEKLYTQVLQPELGEWFQYFVPKGKRRSPAINRGYWIRMESIRQMVIRIIKANSP-----NVRINVVNLGCGFDPLAFQLLSLFKNQYNLNFIDIDYPDLVKNKYNMIQQSDEIKQLIGDQGSKSSDLYVMETDNYQLVGCDLKNLAYYKEILPKLVSRNVDP 204          
BLAST of FC920706 vs. ExPASy Swiss-Prot
Match: LCMT2_SCHPO (Leucine carboxyl methyltransferase 2 OS=Schizosaccharomyces pombe GN=ppm2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.268e-12
Identity = 50/180 (27.78%), Postives = 80/180 (44.44%), Query Frame = 3
Query:   96 SQSNKAAVQATNDDASASKLSCVKKGY----MKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAE---GKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMD 614
            ++S    V+ TND +  SK S  K GY    +   Y   F+++  RRSP +NRGY+ R  A+R  +YQFL        K   +K I++LGAG+D   FQL +         ++ ++D+ E    +  +I +   L   V           E+   NY     +L  +  L   +    +D
Sbjct:    9 TKSKDREVRKTNDSSILSKASVEKCGYPGFTVGHSYYQPFIQKSPRRSPSVNRGYWTRCMAIRFAVYQFL------KNKTGKRKAIVNLGAGYDPLAFQLLSSHEYNTDDVVFYDVDYPETIENRVQMIRSDSFLSSIVLEDKEFDLDGTEIHTKNYHSFGCNLNLLNQLESCLEKYGID 182          

HSP 2 Score: 24.6386 bits (52), Expect = 5.268e-12
Identity = 10/33 (30.30%), Postives = 18/33 (54.55%), Query Frame = 1
Query:  604 LIWIQECVLIYLDPDSSRAIVGWASK--TFHSC 696
            +++I E   +Y+   +S  ++ W SK    HSC
Sbjct:  188 ILFISEVAAVYMPRQASEKLIRWMSKFPDAHSC 220          
BLAST of FC920706 vs. ExPASy Swiss-Prot
Match: LCMT2_EMENI (Leucine carboxyl methyltransferase 2 OS=Emericella nidulans GN=ppm2 PE=3 SV=2)

HSP 1 Score: 63.929 bits (154), Expect = 6.762e-12
Identity = 55/198 (27.78%), Postives = 95/198 (47.98%), Query Frame = 3
Query:   87 VADSQSNKAA--------------VQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGK---APHLYVELDFIE-VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPRMC 626
            +A S+SN+AA              V ATN+ +  SK S     Y +  +   FV++P RR+P+INRGY+ R  A+   + +F+    D        K +L+LG GFD   F L +  +   +   +V++D+ + + +KKAAL E     +    V     ++  ++    Y  +  DL+++  L+ V+  A + P  C
Sbjct:    1 MAPSKSNQAAKSAVPTKEEKSADLVMATNNSSIVSKRSVEMLYYPEPHFFCHFVKKPQRRAPLINRGYWLRMHAMEESVRRFMRESPD------KPKFVLNLGCGFDPLPFILLSADRSLCSQTTFVDIDYEKLMLNKKAALREAGALTQILEDVEFGPDESAVQIRSGQYVAVGCDLKNLDKLDRVLR-AEVLPAEC 191          

HSP 2 Score: 27.335 bits (59), Expect = 6.762e-12
Identity = 10/26 (38.46%), Postives = 18/26 (69.23%), Query Frame = 1
Query:  604 LIWIQECVLIYLDPDSSRAIVGWASK 681
            ++++ E  L Y+D  S+ A+V WAS+
Sbjct:  193 VLFLAEVSLTYMDVKSANAVVSWASR 218          
BLAST of FC920706 vs. ExPASy Swiss-Prot
Match: LCMT2_ASPOR (Leucine carboxyl methyltransferase 2 OS=Aspergillus oryzae GN=ppm2 PE=3 SV=2)

HSP 1 Score: 61.6178 bits (148), Expect = 5.450e-11
Identity = 50/174 (28.74%), Postives = 84/174 (48.28%), Query Frame = 3
Query:  117 VQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFD-TTYFQLQAEGK--APHLYVELDFIE-VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPRMC 626
            V  TN+ +  SK S     Y K  +   FV++P RRSP+INRGY+ R  A+   + +F+   SD        K +L+LG GFD   Y  L A+        +V++D+ + + +KK A+ +T    +    V      +  ++    Y  +  DL+++  L+ V+  A + P  C
Sbjct:   23 VMGTNNSSIVSKRSVEMLYYSKPHFFRYFVKKPQRRSPLINRGYWLRMHAMAETVRKFMREPSD------KPKFVLNLGCGFDPLPYMLLSADNDLCRDTTFVDIDYEKLMVNKKTAIRKTDEITQLLEDVEFLPDDSAVQIRSKPYLAIGCDLKNLTKLDTVLR-AEVLPSEC 189          

HSP 2 Score: 26.5646 bits (57), Expect = 5.450e-11
Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  604 LIWIQECVLIYLDPDSSRAIVGWAS 678
            ++++ E  L Y+D  S+ A+V WAS
Sbjct:  191 VLFLAEVSLTYMDVKSANAVVSWAS 215          
The following BLAST results are available for this feature:
BLAST of FC920706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
LCMT1_BOVIN5.070e-1634.44Leucine carboxyl methyltransferase 1 OS=Bos taurus... [more]
LCMT1_CRYNE9.519e-1630.59Leucine carboxyl methyltransferase 1 OS=Cryptococc... [more]
LCMT1_YARLI2.101e-1534.83Leucine carboxyl methyltransferase 1 OS=Yarrowia l... [more]
LCMT2_ASPFU6.135e-1430.00Leucine carboxyl methyltransferase 2 OS=Aspergillu... [more]
LCMT1_SCHPO3.952e-1332.26Leucine carboxyl methyltransferase 1 OS=Schizosacc... [more]
LCMT1_NEUCR8.949e-1334.01Leucine carboxyl methyltransferase 1 OS=Neurospora... [more]
LCMT2_CANAL2.604e-1228.65Leucine carboxyl methyltransferase 2 OS=Candida al... [more]
LCMT2_SCHPO5.268e-1227.78Leucine carboxyl methyltransferase 2 OS=Schizosacc... [more]
LCMT2_EMENI6.762e-1227.78Leucine carboxyl methyltransferase 2 OS=Emericella... [more]
LCMT2_ASPOR5.450e-1128.74Leucine carboxyl methyltransferase 2 OS=Aspergillu... [more]

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Properties
Property NameValue
Genbank descriptionC32012A06EF RVDevelop1 Citrus clementina cDNA clone C32012A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920706 ID=FC920706; Name=FC920706; organism=Citrus clementina; type=EST; length=700bp
AAAAATTCGAAAGATCATTTTGATCGCTGTCCTCCGAACACCTCGAATCG
CCTCTCGCAAACGGTTGTTTGAATATGGCCTATCCCGTTGCTGATTCACA
AAGTAATAAAGCTGCCGTTCAAGCCACAAACGACGACGCTTCTGCAAGTA
AACTATCATGTGTGAAGAAGGGATATATGAAAGATGATTACATCCATTTA
TTTGTAAGAAGACCTGTGAGGAGATCTCCCATAATCAACCGAGGTTACTT
TGCTCGTTGGGCTGCTCTTAGAAGGCTTCTCTATCAGTTTCTTGATTGTG
GAAGTGACGGTGATAAAAAATGTCATACAAAGAAGCAAATATTATCACTC
GGAGCTGGCTTTGATACCACATATTTTCAATTGCAGGCTGAGGGAAAAGC
GCCGCATTTATATGTAGAACTGGATTTCATAGAGGTAACTAGTAAAAAGG
CAGCACTTATTGAAACTCATGGCGAATTGAAGGACAAAGTTGGTGTTACA
GCATCAATCTCGCAAGCTAAAGGAGAAGTGCTTGGTGATAATTACAAGCT
ACTCCCTGTGGATTTGAGGGACATACAAATGTTAAATGAAGTCATAAATT
TGGCTAATATGGATCCAAGAATGTGTTTTAATATACTTGGATCCAGATTC
AAGCCGTGCTATAGTTGGTTGGGCTTCAAAAACATTTCACAGCTGTATTT
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