FC920708

Overview
NameFC920708
Unique NameFC920708
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15209 contig Ccv1_Contig15209:96..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920708 vs. ExPASy Swiss-Prot
Match: RL10_METTH (50S ribosomal protein L10e OS=Methanobacterium thermoautotrophicum GN=rpl10e PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.202e-26
Identity = 63/155 (40.65%), Postives = 92/155 (59.35%), Query Frame = 3
Query:   96 KPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR 560
            + Y +  + + +P  KI  YD+G       EFP  + +       ++  ALEAARIA N+YM + AG+  +HL++RV+P H++R N M + AGADR+Q GMR AFGKP  T A V   Q ++++     N   A+EALRRA  KFP   +I++ R
Sbjct:    3 RAYTRREYIKKIPGSKIVQYDMGNLSA---EFPISLSVAVKAPTQITHNALEAARIASNRYMQRRAGRMGYHLKIRVYPHHIVRENPMATGAGADRVQDGMRKAFGKPVSTVALVKKNQKIITIETNKKNFKDAKEALRRAAMKFPVPCRIVIDR 154          
BLAST of FC920708 vs. ExPASy Swiss-Prot
Match: RL10_METS5 (50S ribosomal protein L10e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.905e-26
Identity = 68/169 (40.24%), Postives = 97/169 (57.40%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVA-IGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIV 554
            M  RP RCYR      Y +  +  GVP PKI  + +G  KK  D   F V L++ +   +   ALEAAR+   K M    G +  F+L V  +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+  +G +++++R K  +   A++A + A  K P   +I+V
Sbjct:    1 MPLRPGRCYRHFSGPAYTRKEYIPGVPQPKITKFTMGDHKKDYD---FEVRLLTKQIGQIRHNALEAARVIALKQMTSMVGNETDFYLYVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARITKLGDLIMAIRVKKEHLEFAKKAFKVASSKLPLDTEIVV 166          
BLAST of FC920708 vs. ExPASy Swiss-Prot
Match: RL10_METLZ (50S ribosomal protein L10e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.366e-26
Identity = 66/167 (39.52%), Postives = 97/167 (58.08%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIV 554
            M R+PAR YR +  K Y +  +  GVP  K+  +D+G      ++FP  +HL + E   +   A+EAARI  N+ + K  G++ FHL++R +P HVLR +K  + AGADR+  GMR AFGK  GT ARVA  Q + +V         A++AL  + +K P   ++IV
Sbjct:    1 MVRKPARMYRNLAKKAYCRREYMGGVPGLKVVQFDMGNLS---EDFPVAIHLEALEACQIRHTAMEAARINMNRRLMKTVGRNNFHLKIRAYPHHVLREHKQATGAGADRVSEGMRLAFGKAVGTAARVAPRQRVFTVWTTPQYVDQAKDALLHSGYKLPTPVRVIV 164          
BLAST of FC920708 vs. ExPASy Swiss-Prot
Match: RL10_METMA (50S ribosomal protein L10e OS=Methanosarcina mazei GN=rpl10e PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.864e-25
Identity = 66/167 (39.52%), Postives = 98/167 (58.68%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIV 554
            M R+P   YR ++ + + + ++  GVP  ++  YD+G K      FP  + LV+ EK  +   ALEAARI  N+++   AGK  F++++RV+P  VLR NK  + AGADR+ +GMR AFGK  GT ARV   Q L +V  +  N   A++AL  A  K P   +I++
Sbjct:    1 MVRKPGSMYRNVRQRSFTRRKYMGGVPGSQVIHYDMGDKANTT--FPVKISLVAEEKCQIRHTALEAARITANRHLVADAGKMGFYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGKNVGTAARVNSMQKLFTVAVEKQNFPAAKKALWHAGQKLPTPVRIVI 165          
BLAST of FC920708 vs. ExPASy Swiss-Prot
Match: RL10_THEON (50S ribosomal protein L10e OS=Thermococcus onnurineus (strain NA1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.434e-25
Identity = 65/160 (40.62%), Postives = 88/160 (55.00%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            MG RPA+  R +    Y +  + RG P PKI I+D+G       EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  ARV   Q +L+V   + +   A EA+RRA  K P
Sbjct:    1 MGLRPAKIDRDVDKPAYTRREYIRGAPGPKITIFDMGNLSA---EFQYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVKKDQKILTVWVNEGHLKFALEAMRRAAMKLP 157          
BLAST of FC920708 vs. ExPASy Swiss-Prot
Match: RL10_THESM (50S ribosomal protein L10e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.179e-25
Identity = 64/160 (40.00%), Postives = 88/160 (55.00%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            M  RPA+  R +    Y +  + RG P P+I I+D+G       +F F V L + E   +   ALEAAR   N+Y++K  G+  FH ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +L+VR    +   A  A++RA  KFP
Sbjct:    1 MALRPAKIDRYVDKPAYTRREYIRGAPGPRITIFDMG---NPAGDFEFEVSLHTAEPVQIRQNALEAARTQLNRYLSKNVGRSNFHYKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILTVRVNKQHLKFALAAMKRASMKFP 157          
BLAST of FC920708 vs. ExPASy Swiss-Prot
Match: RL10_METPE (50S ribosomal protein L10e OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.179e-25
Identity = 64/169 (37.87%), Postives = 94/169 (55.62%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR 560
            M R+P + YR +  K Y + ++  GVP  KI  +++G   +   EFP  + L   E   +   ALEAARIA N+ M    G+  FH ++R +P HVLR NK  + AGADR+  GMR AFGK  GT ARV   Q + +V   +     +++ALR   +K P   ++++ R
Sbjct:    1 MVRKPGKMYRNLAKKAYTRRKYMGGVPGSKIVQFEMGNLSQ---EFPVEISLEVLESCQIRHTALEAARIAINRKMMDQVGRANFHFKIRTYPHHVLRENKQATGAGADRVSEGMRMAFGKAVGTAARVQPKQKVFTVYTNEQYIEKSKDALRHGGYKLPSPARLVIER 166          
BLAST of FC920708 vs. ExPASy Swiss-Prot
Match: RL10_PYRFU (50S ribosomal protein L10e OS=Pyrococcus furiosus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25
Identity = 65/160 (40.62%), Postives = 86/160 (53.75%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            M  RPA+  R +    Y +  + RG P PKI I+D+G       +F F V L + E   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:    1 MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVSLHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of FC920708 vs. ExPASy Swiss-Prot
Match: RL10_METMJ (50S ribosomal protein L10e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25
Identity = 67/169 (39.64%), Postives = 94/169 (55.62%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR 560
            M R+PA+ YR +  K Y +  +  GVP  KI  +D+G      +++P  + +V  E   +   ALEAARI  N+ + K  G+  FHL++R  P HVLR NK  + AGADR+  GMR AFGK  GT ARV  GQ + SV         A+ +L+R  +K P   +I+  R
Sbjct:    1 MVRKPAKMYRNLAKKAYTRREYMGGVPGSKIVQFDMGNL---TEDYPVELSIVVDETCQIRHTALEAARIGINRQLQKEVGRANFHLKIRTFPHHVLRENKQATGAGADRVSEGMRLAFGKAVGTAARVEKGQKVFSVWTSPQYVDKAKVSLKRGIYKLPTPARIVEER 166          
BLAST of FC920708 vs. ExPASy Swiss-Prot
Match: RL10_PYRHO (50S ribosomal protein L10e OS=Pyrococcus horikoshii GN=rpl10e PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.082e-25
Identity = 65/160 (40.62%), Postives = 86/160 (53.75%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            M  RPA+  R +    Y +  + RG P PKI I+D+G       +F F V L + E   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:    1 MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVALHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKRDQKILSIRVNRQHLKFAIEGARRAAMKFP 157          
The following BLAST results are available for this feature:
BLAST of FC920708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL10_METTH2.202e-2640.6550S ribosomal protein L10e OS=Methanobacterium the... [more]
RL10_METS54.905e-2640.2450S ribosomal protein L10e OS=Metallosphaera sedul... [more]
RL10_METLZ8.366e-2639.5250S ribosomal protein L10e OS=Methanocorpusculum l... [more]
RL10_METMA1.864e-2539.5250S ribosomal protein L10e OS=Methanosarcina mazei... [more]
RL10_THEON2.434e-2540.6350S ribosomal protein L10e OS=Thermococcus onnurin... [more]
RL10_THESM3.179e-2540.0050S ribosomal protein L10e OS=Thermococcus sibiric... [more]
RL10_METPE3.179e-2537.8750S ribosomal protein L10e OS=Methanosphaerula pal... [more]
RL10_PYRFU5.423e-2540.6350S ribosomal protein L10e OS=Pyrococcus furiosus ... [more]
RL10_METMJ5.423e-2539.6450S ribosomal protein L10e OS=Methanoculleus maris... [more]
RL10_PYRHO7.082e-2540.6350S ribosomal protein L10e OS=Pyrococcus horikoshi... [more]

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Properties
Property NameValue
Genbank descriptionC32012A09EF RVDevelop1 Citrus clementina cDNA clone C32012A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920708 ID=FC920708; Name=FC920708; organism=Citrus clementina; type=EST; length=667bp
GACTTTTCTTGGGTTTCTGGTTCAGTTGCTGAATACCTACCAGGGCTTTC
GCCATGGGAAGAAGACCTGCTAGGTGTTATCGCCAGATAAAAAATAAGCC
GTATCCGAAATCACGCTTTTGTCGTGGTGTGCCTGATCCCAAGATCAGGA
TCTATGATGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCTTTCTGT
GTGCACTTGGTGTCTTGGGAAAAGGAGAACGTATCTAGTGAAGCTCTTGA
GGCTGCTCGAATTGCTTGCAACAAATATATGGCCAAGTTTGCCGGGAAAG
ATGCTTTCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTGCGTATC
AACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGTATGAG
GGGTGCTTTCGGTAAACCACAGGGCACTTGTGCTAGAGTTGCCATTGGAC
AGGTCCTCCTGTCAGTTCGCTGCAAGGATAGCAATAGTCTTCATGCTCAA
GAGGCTCTTCGTCGTGCAAAGTTCAAGTTTCCTGGTCGCCAAAAAATCAT
TGTCAGCAGAAAGTGGGGTTTCACCAAGTTTAGCCGCAGTGATTATTTGA
GGTTCAAGTCAGAGAACCGTATTGTGCCCGATGGTGTTAAATGCAAGCTT
CTTGGATGTCATGGACC
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