FC920709

Overview
NameFC920709
Unique NameFC920709
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14180 contig Ccv1_Contig14180:1..643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920709 vs. ExPASy Swiss-Prot
Match: PIMT_METM7 (Protein-L-isoaspartate O-methyltransferase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pcm PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.823e-12
Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = 2
Query:  212 VNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPY--VDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVASSIQNIEKSAAAPLLKEGSLSVHVGDGRKSW 643
            +N+   ++ +L   G I  + V + + T+ R  F+P     Y  +DSP+ IGY  TISA HM     + L+  L  G + L++G+G+GY  A  + +VG  G    +E IPEL   S Q + +      L   ++ V +GDG K +
Sbjct:    3 LNEIVGVIGNLISNGYIKKQSVIDALMTVPRHKFIPKSMEEYAYIDSPLGIGYGQTISAIHMVGIMCEELD--LDVGQNVLEVGTGSGYHAAVVSEIVGESGNVTTIERIPELFEKSKQVLLE------LGYENVEVVLGDGTKGY 140          
BLAST of FC920709 vs. ExPASy Swiss-Prot
Match: PIMT2_METAC (Protein-L-isoaspartate O-methyltransferase 2 OS=Methanosarcina acetivorans GN=pcm2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.993e-12
Identity = 49/134 (36.57%), Postives = 70/134 (52.24%), Query Frame = 2
Query:  224 KAMVEHLQHYGVITSKKVSEVMETIDRACFVPD--GTPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVASSIQNIEKSA---AAPLLKEGSL 610
            K +VE L+   ++  KKV + M  + R  FVP+      Y D P+ IG+  TIS PH  A   ++LE  L  G   L+IG+G+GY  A  A +VG  G    VE I  LV  + +N+E+        LL+ GS+
Sbjct:   31 KLLVEGLED--IVRDKKVLKAMFRVPRHRFVPEYEQRAAYTDRPLEIGHGQTISTPHTVALMCEILE--LSEGHKVLEIGTGSGYNAAVMAELVGKTGHIYSVERIEPLVNFARKNLEQMGYDNVTVLLENGSM 160          
BLAST of FC920709 vs. ExPASy Swiss-Prot
Match: PIMT_PYRAR (Protein-L-isoaspartate O-methyltransferase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=pcm PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.478e-11
Identity = 42/119 (35.29%), Postives = 70/119 (58.82%), Query Frame = 2
Query:  224 KAMVEHLQHYGVITSKKVSEVMETIDRACFV-PD-GTPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVASSIQNIEK 574
            K +V+ L+  GV+ S++V + + ++ R  FV P+     Y D P+ +  +ATISAPHM A   +L+E   +PGM  L++G+G+GY  A  A  +  +G+   VE +  L   + QN+E+
Sbjct:    3 KKLVDDLEREGVLKSERVKKALLSVPREEFVMPEYRMMAYEDRPLPLFADATISAPHMVAMMCELIEP--RPGMSILEVGTGSGYHAAVCAEAIERRGKVYTVEIVKGLAIYAAQNLER 119          
BLAST of FC920709 vs. ExPASy Swiss-Prot
Match: PIMT_METM5 (Protein-L-isoaspartate O-methyltransferase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pcm PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.227e-11
Identity = 45/146 (30.82%), Postives = 75/146 (51.37%), Query Frame = 2
Query:  212 VNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPY--VDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVASSIQNIEKSAAAPLLKEGSLSVHVGDGRKSW 643
            +N+   ++ +L   G I  + V + + ++ R  F+P     Y  +DSP+ IG   TISA HM     + L+  L  G + L++G+G+GY  A  + +VG  G+   +E IPEL   S Q + +      L   ++ V +GDG K +
Sbjct:    3 LNEIIGVIGNLISKGYIQKQSVIDALMSVPRHKFIPKAMEEYAYIDSPLGIGCGQTISAIHMVGIMCEELD--LDVGQNVLEVGTGSGYHAAVVSEIVGESGKVTTIERIPELFEKSKQVLSE------LGYENVEVVLGDGTKGY 140          
BLAST of FC920709 vs. ExPASy Swiss-Prot
Match: PIMT_THESM (Protein-L-isoaspartate O-methyltransferase OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=pcm PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.520e-11
Identity = 49/142 (34.51%), Postives = 75/142 (52.82%), Query Frame = 2
Query:  230 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPY--VDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVASSIQNIEKSAAAPLLKEGSLSVHV--GDGRKSW 643
            +VE+L+  G+I S+KV      + R  FV D    Y  VD P+ I    TISAPHM A  L+L E  L+ GM+ L++G+G+G+  A    +V  +     +E + +LV  + +N+E++            VHV  GDG K +
Sbjct:   13 LVENLEREGIIKSEKVKRAFLRVPRYKFVSDRYKEYAHVDEPLPIPAGQTISAPHMVAIMLELAE--LEGGMNVLEVGAGSGWNAALIYELV--KREVYTIERVSDLVEFARKNLERAGYKD-------KVHVIWGDGSKGY 143          
BLAST of FC920709 vs. ExPASy Swiss-Prot
Match: PIMT_METVS (Protein-L-isoaspartate O-methyltransferase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pcm PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.209e-11
Identity = 49/146 (33.56%), Postives = 75/146 (51.37%), Query Frame = 2
Query:  212 VNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPD--GTPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVASSIQNIEKSAAAPLLKEG--SLSVHVGDGRK 637
            +N+  ++V +L   G I  K V   + ++ R  FVP    +  Y D+P+ IGY  TISA HM     + L+  L  G + L+IG+G+GY  A    ++G  G+   +E + EL  S+ +N        LLK G  ++ V  GDG K
Sbjct:    3 LNEMVSVVTNLVERGYIRKKSVVSALLSVPRHKFVPKYLESSAYQDNPLEIGYGQTISAIHMVGIMCEELD--LDKGQNVLEIGTGSGYHAAVVLEIIGKSGKLTTIERVFELFNSAKEN--------LLKFGYNNIEVIYGDGTK 138          
BLAST of FC920709 vs. ExPASy Swiss-Prot
Match: PIMT_METM6 (Protein-L-isoaspartate O-methyltransferase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pcm PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.209e-11
Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 2
Query:  212 VNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPY--VDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVASSIQ 562
            +N+   +V +L   G I  + V + + ++ R  F+P     Y  +DSP+ IG   TISA HM     + L+ N+  G + L++G+G+GY  A  + +VG  G+   VE IPEL   S Q
Sbjct:    3 LNEIVGVVGNLISKGYIKKQSVIDALMSVPRHKFLPKNMEEYAYIDSPLGIGCGQTISAIHMVGIMCEELDLNM--GQNVLEVGTGSGYQAAVVSKIVGESGKVTTVERIPELFEKSKQ 119          
BLAST of FC920709 vs. ExPASy Swiss-Prot
Match: PIMT_KORCO (Protein-L-isoaspartate O-methyltransferase OS=Korarchaeum cryptofilum (strain OPF8) GN=pcm PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.209e-11
Identity = 43/125 (34.40%), Postives = 66/125 (52.80%), Query Frame = 2
Query:  230 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPP--YVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ-------GRAVGVEHIPELVASSIQNIEKS 577
            ++E L   G+I ++KV    E + R  FVP+      Y D P+ IG + TISAPHM     ++L+  L+ G   L++GSG+GY  A  A +V P        G  + VE  P L + + +N+ K+
Sbjct:    6 LIESLVRRGIIKTEKVRRAAERVKRELFVPERYKEVAYEDIPLPIGDDQTISAPHMVFIMNEVLD--LEEGQLVLEVGSGSGYHAATIAEIVAPSDSPPSRWGAVITVEINPRLASLAFENLSKA 128          
The following BLAST results are available for this feature:
BLAST of FC920709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
PIMT_METM73.823e-1232.19Protein-L-isoaspartate O-methyltransferase OS=Meth... [more]
PIMT2_METAC4.993e-1236.57Protein-L-isoaspartate O-methyltransferase 2 OS=Me... [more]
PIMT_PYRAR2.478e-1135.29Protein-L-isoaspartate O-methyltransferase OS=Pyro... [more]
PIMT_METM54.227e-1130.82Protein-L-isoaspartate O-methyltransferase OS=Meth... [more]
PIMT_THESM5.520e-1134.51Protein-L-isoaspartate O-methyltransferase OS=Ther... [more]
PIMT_METVS7.209e-1133.56Protein-L-isoaspartate O-methyltransferase OS=Meth... [more]
PIMT_METM67.209e-1134.45Protein-L-isoaspartate O-methyltransferase OS=Meth... [more]
PIMT_KORCO7.209e-1134.40Protein-L-isoaspartate O-methyltransferase OS=Kora... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32012A10EF RVDevelop1 Citrus clementina cDNA clone C32012A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920709 ID=FC920709; Name=FC920709; organism=Citrus clementina; type=EST; length=643bp
TGGTTTAAAGCACACATTATCAACCTTCACTCTTATCCCTCACCGTCATC
GCTGTTCTTACTTACCATCACCATCACCATCACCGTCACTTGTCTCTTTG
TCTTCTTCTTTTCATCTTCCAAATCCAGATAACCTCAGTCGTTTCCTCAC
GGGTAACCTCACGGGTAACTGTCCCTTTTTCAAGATGGAGAGATACTGGA
GTGGAAGTGGTGTCAACAAGAATAAAGCGATGGTGGAGCATTTGCAGCAT
TATGGAGTGATTACATCAAAAAAGGTATCTGAAGTAATGGAAACTATTGA
TCGGGCTTGCTTTGTGCCAGATGGTACTCCACCTTATGTTGACAGCCCAA
TGGCAATAGGTTACAATGCCACTATTTCAGCACCTCATATGCATGCAACA
TGCCTTCAATTATTGGAGGAGAATCTGAAACCTGGCATGCACGCTTTGGA
TATTGGTTCTGGAACTGGATATTTGACAGCGTGCTTTGCCTTGATGGTTG
GACCACAAGGTCGTGCTGTGGGTGTCGAGCACATTCCTGAGTTGGTGGCT
TCATCAATCCAGAATATTGAAAAAAGTGCAGCGGCTCCATTGCTGAAAGA
AGGTTCTCTCTCAGTGCATGTTGGTGATGGAAGAAAAAGCTGG
back to top