FC920710

Overview
NameFC920710
Unique NameFC920710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14181 contig Ccv1_Contig14181:1..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A5_MOUSE (Solute carrier family 12 member 5 OS=Mus musculus GN=Slc12a5 PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.103e-48
Identity = 101/223 (45.29%), Postives = 135/223 (60.54%), Query Frame = 3
Query:    6 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXX-------IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR-EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALA 650
            LVG++FP+VTGIMAGSNRS  L+D Q+SIP G           Y+ SV+LFGA                       +AWP P VI IG   ST GA LQSLTGAPRLL AI+ D I+P L  F   +   EP  A   TA IC   ++I +LD + P ++MFFL+CY  VNL+C +  LL  P+WRPR++++HW+LS LG   C+ +MF+ SW + +V++ +A
Sbjct:  426 LVGIYFPSVTGIMAGSNRSGDLRDAQKSIPTGTILAIATTSAVYISSVVLFGACIEGVVLRDKFGEAVNGNLVVGTLAWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAISRDGIVPFLQVFGHGKANGEPTWALLLTACICEIGILIASLDEVAPILSMFFLMCYMFVNLACAVQTLLRTPNWRPRFRYYHWTLSFLGMSLCLALMFICSWYYALVAMLIA 648          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A5_HUMAN (Solute carrier family 12 member 5 OS=Homo sapiens GN=SLC12A5 PE=2 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 2.103e-48
Identity = 101/223 (45.29%), Postives = 135/223 (60.54%), Query Frame = 3
Query:    6 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXX-------IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR-EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALA 650
            LVG++FP+VTGIMAGSNRS  L+D Q+SIP G           Y+ SV+LFGA                       +AWP P VI IG   ST GA LQSLTGAPRLL AI+ D I+P L  F   +   EP  A   TA IC   ++I +LD + P ++MFFL+CY  VNL+C +  LL  P+WRPR++++HW+LS LG   C+ +MF+ SW + +V++ +A
Sbjct:  426 LVGIYFPSVTGIMAGSNRSGDLRDAQKSIPTGTILAIATTSAVYISSVVLFGACIEGVVLRDKFGEAVNGNLVVGTLAWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAISRDGIVPFLQVFGHGKANGEPTWALLLTACICEIGILIASLDEVAPILSMFFLMCYMFVNLACAVQTLLRTPNWRPRFRYYHWTLSFLGMSLCLALMFICSWYYALVAMLIA 648          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A7_HUMAN (Solute carrier family 12 member 7 OS=Homo sapiens GN=SLC12A7 PE=1 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 3.587e-48
Identity = 101/223 (45.29%), Postives = 132/223 (59.19%), Query Frame = 3
Query:    6 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXX-------IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR-EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALA 650
            LVG++FP+VTGIMAGSNRS  LKD Q+SIP G           Y+  ++LFGA                       +AWP P VI IG   ST GA LQSLTGAPRLL AIA D I+P L  F   +   EP  A   T  IC   ++I +LD + P ++MFFL+CY  VNL+C +  LL  P+WRPR+KF+HW+LS LG   C+ +MF+ SW + + ++ +A
Sbjct:  423 LVGIYFPSVTGIMAGSNRSGDLKDAQKSIPTGTILAIVTTSFIYLSCIVLFGACIEGVVLRDKFGEALQGNLVIGMLAWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIARDGIVPFLQVFGHGKANGEPTWALLLTVLICETGILIASLDSVAPILSMFFLMCYLFVNLACAVQTLLRTPNWRPRFKFYHWTLSFLGMSLCLALMFICSWYYALSAMLIA 645          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: KCC3_CAEEL (Sodium/chloride cotransporter 3 OS=Caenorhabditis elegans GN=kcc-3 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.915e-25
Identity = 73/224 (32.59%), Postives = 102/224 (45.54%), Query Frame = 3
Query:    6 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXX-------IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYF-KVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALAA 653
            L+ ++FPAVTGI  G+N S  L+D QRSIP+G           Y I  +LFG +                      ++WP PAV+ +G  LST GAALQ L  APRLL +IA DD++P+L  F +V +  EP +    T  I    +++G +D I   +  FFL+                             +LSLLG+  C  IMF  S     ++    A
Sbjct:  382 LMAIYFPAVTGIFTGTNMSGDLRDPQRSIPVGTIAATLTTSAIYYILAILFGGSITRSVLRDKFGRSIGNTMVVAALSWPHPAVVTVGAFLSTFGAALQCLCSAPRLLQSIAKDDVIPILAPFARVTKNNEPFLGLVLTVIIAECGILLGAVDKIAEVLDFFFLM-----------------------------TLSLLGAALCFFIMFASSVPLACIACTATA 576          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A9_DANRE (Solute carrier family 12 member 9 OS=Danio rerio GN=slc12a9 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.718e-24
Identity = 66/214 (30.84%), Postives = 110/214 (51.40%), Query Frame = 3
Query:   15 LFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXXI-AWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDI--LPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLAL 647
            + F + TGIMAG+N S  LK+   SIP G           YV+  LL  +                +  WP    + IG+  ++L AA+ S+ GA R+L A+A D +  LP+      +    P ++  +T  +    +  G L++I   +T+F+LL Y+ V+L+C  L+   AP++RP ++F  W   LLG + C+V+MF+I+  ++  S+ L
Sbjct:  279 VMFTSCTGIMAGANMSGELKNPSESIPKGTIMAVAYTFTVYVLLYLLLSSTCDRSLLLNDYAVFQRVNVWP--PFVTIGVYCASLSAAMCSMIGASRILHALALDQLFGLPLAPAAVTSSSGNPWVSVLYTWALVQCTLFAGQLNVIAGIVTVFYLLAYAAVDLACLALEWASAPNFRPTFQFFSWHTCLLGIISCVVMMFVINPVYSSASIVL 490          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A9_HUMAN (Solute carrier family 12 member 9 OS=Homo sapiens GN=SLC12A9 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.051e-23
Identity = 66/207 (31.88%), Postives = 105/207 (50.72%), Query Frame = 3
Query:    3 ALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXXIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVL--NYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLIS 617
            ++  + F   TGIMAG+N S  LKD  R+IP+G           YV+   L                   I+  +P ++ IGI  + L A++ SL GA R+L A+A DD+  V+      V+ G  P  A  ++  +    ++ G L+ +   +T+F+L+ Y+ V+LSC  L+   AP++RP +    W   LLG   C+++MFLIS
Sbjct:  269 SVFAVLFNGCTGIMAGANMSGELKDPSRAIPLGTIVAVAYTFFVYVLLFFLSSFTCDRTLLQEDYGFFRAISL-WPPLVLIGIYATALSASMSSLIGASRILHALARDDLFGVILAPAKVVSRGGNPWAAVLYSWGLVQLVLLAGKLNTLAAVVTVFYLVAYAAVDLSCLSLEWASAPNFRPTFSLFSWHTCLLGVASCLLMMFLIS 474          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A9_RAT (Solute carrier family 12 member 9 OS=Rattus norvegicus GN=Slc12a9 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.216e-23
Identity = 65/207 (31.40%), Postives = 105/207 (50.72%), Query Frame = 3
Query:    3 ALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXXIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVL--NYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLIS 617
            ++  + F   TGIMAG+N S  LKD  R+IP+G           Y++   L                   I+  +P ++ IGI  + L A++ SL GA R+L A+A DD+  V+      V+ G  P  A  ++  +    ++ G L+ +   +T+F+L+ Y+ V+LSC  L+   AP++RP +    W   LLG   C+++MFLIS
Sbjct:  269 SVFAVLFNGCTGIMAGANMSGELKDPSRAIPLGTIIAVAYTFFIYILLFFLSSFTCDRALLQGDYGFFRDISL-WPPLVLIGIYATALSASMSSLIGASRILHALAQDDLFGVILAPAKVVSGGGNPWGAVLYSWGLVQLVLLAGKLNTLAAVVTVFYLVAYAAVDLSCLSLEWASAPNFRPTFSLFSWHTCLLGVASCLLMMFLIS 474          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A9_MOUSE (Solute carrier family 12 member 9 OS=Mus musculus GN=Slc12a9 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.216e-23
Identity = 65/207 (31.40%), Postives = 105/207 (50.72%), Query Frame = 3
Query:    3 ALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXXIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVL--NYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLIS 617
            ++  + F   TGIMAG+N S  LKD  R+IP+G           Y++   L                   I+  +P ++ IGI  + L A++ SL GA R+L A+A DD+  V+      V+ G  P  A  ++  +    ++ G L+ +   +T+F+L+ Y+ V+LSC  L+   AP++RP +    W   LLG   C+++MFLIS
Sbjct:  269 SVFAVLFNGCTGIMAGANMSGELKDPSRAIPLGTIIAVAYTFFIYILLFFLSSFTCDRALLQEDYGFFRDISL-WPPLVLIGIYATALSASMSSLIGASRILHALAQDDLFGVILAPAKVVSGGGNPWGAVLYSWGLVQLVLLAGKLNTLAAVVTVFYLVAYAAVDLSCLSLEWASAPNFRPTFSLFSWHTCLLGVASCLLMMFLIS 474          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A9_XENLA (Solute carrier family 12 member 9 OS=Xenopus laevis GN=slc12a9 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.162e-22
Identity = 67/213 (31.46%), Postives = 110/213 (51.64%), Query Frame = 3
Query:   15 LFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXXIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVL--NYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLAL 647
            + F   TGIMAG N S  LK   RSIP+G           Y+I + +F A                    +P  + IG+  ++L A++ +L GA R+L A+A DD+  VL      V++G  P  A  +T  +    ++ G L+ I   +T+F+L+ Y+ ++L+C  L+   AP++RP ++F  W   LLG +  +V+MFLI+ ++   S+ L
Sbjct:  276 VMFNGCTGIMAGCNLSGELKQPSRSIPMGTIIAVIITFFVYLI-LFIFTAFTCDRTLLREDYGFFRSINIWPPFVLIGVYATSLSASMSTLIGASRILHALAKDDLFGVLLAPAKLVSKGGNPWGAVVYTWALVQLVLLAGKLNTIAGIVTVFYLIAYAAIDLACLALEWASAPNFRPTFRFFSWHTCLLGILSSLVMMFLINPAYASGSIVL 487          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A2_SQUAC (Solute carrier family 12 member 2 OS=Squalus acanthias GN=SLC12A2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.532e-22
Identity = 55/149 (36.91%), Postives = 89/149 (59.73%), Query Frame = 3
Query:  225 FPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR--EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLIS-WSFTVVSLALAASYI 662
            F  +I  GI  +TL +AL SL  AP++  A+  D+I P L+ F V  G+  EP      T FI +G ++I  L++I P I+ FFL  Y+ +N S F   L  +P WRP ++F++  +SL+G++ C  +MF+I+ W+  + ++ + A YI
Sbjct:  572 FGPLITAGIFSATLSSALASLVSAPKIFQALCKDNIYPGLHVFSVGYGKNNEPLRGYVLTFFIGLGFILIAELNVIAPIISNFFLASYALINFSVFHASLAKSPGWRPAFRFYNMWISLIGAILCCGVMFVINWWAALLTNVIVLALYI 720          
The following BLAST results are available for this feature:
BLAST of FC920710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
S12A5_MOUSE2.103e-4845.29Solute carrier family 12 member 5 OS=Mus musculus ... [more]
S12A5_HUMAN2.103e-4845.29Solute carrier family 12 member 5 OS=Homo sapiens ... [more]
S12A7_HUMAN3.587e-4845.29Solute carrier family 12 member 7 OS=Homo sapiens ... [more]
KCC3_CAEEL1.915e-2532.59Sodium/chloride cotransporter 3 OS=Caenorhabditis ... [more]
S12A9_DANRE4.718e-2430.84Solute carrier family 12 member 9 OS=Danio rerio G... [more]
S12A9_HUMAN1.051e-2331.88Solute carrier family 12 member 9 OS=Homo sapiens ... [more]
S12A9_RAT5.216e-2331.40Solute carrier family 12 member 9 OS=Rattus norveg... [more]
S12A9_MOUSE5.216e-2331.40Solute carrier family 12 member 9 OS=Mus musculus ... [more]
S12A9_XENLA1.162e-2231.46Solute carrier family 12 member 9 OS=Xenopus laevi... [more]
S12A2_SQUAC7.532e-2236.91Solute carrier family 12 member 2 OS=Squalus acant... [more]

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Properties
Property NameValue
Genbank descriptionC32012A11EF RVDevelop1 Citrus clementina cDNA clone C32012A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920710 ID=FC920710; Name=FC920710; organism=Citrus clementina; type=EST; length=674bp
ATGCATTGGTCGGTCTATTTTTTCCAGCTGTAACGGGAATCATGGCAGGG
TCAAATCGTTCAGCCTCACTGAAAGATACCCAACGTTCAATCCCCATTGG
AACTTTGGCTGCAACTCTTACAACTACTGCATTATATGTGATTTCTGTGT
TGTTATTTGGAGCGGCGGCAACTAGAGAGGAGCTTTTGACAGACAGGCTT
CTTACTGCTACAATCGCTTGGCCTTTCCCAGCAGTTATTCACATAGGGAT
TATTCTTTCAACCTTAGGTGCTGCTCTTCAGAGCCTGACAGGTGCTCCGC
GCTTGCTTGCAGCAATAGCCAATGATGATATTCTACCTGTTCTTAACTAC
TTTAAGGTTGCAGAGGGGCGTGAGCCACACATAGCTACATTCTTCACGGC
ATTCATCTGTATCGGATGTGTCATAATTGGGAATCTGGACCTTATCACAC
CGACAATAACAATGTTTTTTCTTCTGTGTTATTCGGGTGTGAACTTATCT
TGCTTCCTTCTGGATCTTCTCGATGCTCCTAGTTGGCGTCCTCGGTGGAA
ATTTCACCACTGGAGCCTATCACTTCTTGGATCTGTTTTTTGTATTGTGA
TCATGTTCTTGATCTCTTGGTCATTTACGGTGGTGTCTCTGGCCCTTGCA
GCCTCATATATTATTACGTGTGCC
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