FC920710

Overview
NameFC920710
Unique NameFC920710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14181 contig Ccv1_Contig14181:1..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A2_HUMAN (Solute carrier family 12 member 2 OS=Homo sapiens GN=SLC12A2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.285e-21
Identity = 50/134 (37.31%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  225 FPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR--EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISW 620
            F  +I  GI  +TL +AL SL  AP++  A+  D+I P    F    G+  EP      T  I +G ++I  L++I P I+ FFL  Y+ +N S F   L  +P WRP +K+++  +SLLG++ C ++MF+I+W
Sbjct:  599 FTPLISAGIFSATLSSALASLVSAPKIFQALCKDNIYPAFQMFAKGYGKNNEPLRGYILTFLIALGFILIAELNVIAPIISNFFLASYALINFSVFHASLAKSPGWRPAFKYYNMWISLLGAILCCIVMFVINW 732          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: YNSG_SCHPO (Uncharacterized transporter C18H10.16 OS=Schizosaccharomyces pombe GN=SPBC18H10.16 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.678e-21
Identity = 62/220 (28.18%), Postives = 112/220 (50.91%), Query Frame = 3
Query:   12 GLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXXIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGRE--PHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALAASYII 665
            G+FFPA  G++AG++ S  LK   RSIP G           Y++ +L  GA+               I+   P  I  GI+ S   ++   + GA +LL AIA DD++P + +F      +  P++A   T ++     +  ++++++  ITM FLL +  +NLSCFLL +   P++RP +++ +   +L+G++    +MF +      +S  +A   ++
Sbjct:  297 GVFFPATAGLLAGASMSGDLKAPSRSIPKGTISSQATTFLLYLLVILCVGASVTRTGLLLDMDVMEHISL-HPLFIISGILSSGAFSSFMGIFGAAKLLQAIARDDLIPGMFFFAKGSSYDDIPYVAIGVT-YLITQISLFWDINMLSSMITMTFLLTFGFINLSCFLLRISSTPNFRPTFRYFNRRTTLVGTILSFGVMFYVDRLNAFISFLIAGILVV 514          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A3_PSEAM (Solute carrier family 12 member 3 OS=Pseudopleuronectes americanus GN=slc12a3 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.678e-21
Identity = 52/143 (36.36%), Postives = 83/143 (58.04%), Query Frame = 3
Query:  225 FPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR--EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLAL 647
            F  +I  GI  +TL +AL  L  AP++   +  D + P++ +F    G+  EP  A   T  I +  V+I  L+ I P I+ FFL  Y+ +N SCF   + ++P WRP ++F+   LSLLG+V C+VIMFL++W   +++  +
Sbjct:  452 FAPLISAGIFGATLSSALACLVSAPKVFQCLCKDQLYPLIGFFGKGYGKNAEPLRAYLLTYVIAVCFVLIAELNTIAPIISNFFLCSYALINFSCFHASVTNSPGWRPSFRFYSKWLSLLGAVCCVVIMFLLTWWAALIAFGV 594          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A2_MOUSE (Solute carrier family 12 member 2 OS=Mus musculus GN=Slc12a2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.192e-21
Identity = 49/134 (36.57%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  225 FPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR--EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISW 620
            F  +I  GI  +TL +AL SL  AP++  A+  D+I P    F    G+  EP      T  I +G ++I  L++I P I+ FFL  Y+ +N S F   L  +P WRP +K+++  +SL+G++ C ++MF+I+W
Sbjct:  592 FAPLISAGIFSATLSSALASLVSAPKIFQALCKDNIYPAFQMFAKGYGKNNEPLRGYILTFLIALGFILIAELNVIAPIISNFFLASYALINFSVFHASLAKSPGWRPAFKYYNMWISLIGAILCCIVMFVINW 725          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: NKCL_MANSE (Bumetanide-sensitive sodium-(potassium)-chloride cotransporter OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.421e-20
Identity = 72/251 (28.69%), Postives = 109/251 (43.43%), Query Frame = 3
Query:    3 ALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXX---------------------------------IAW-PFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR--EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLAL 647
            ++  +FFP+VTGI AG+N S  LKD   +IP G           Y + VL  G                                                   AW PF   I+ G   +TL  AL +L   PRL+ A+  D I P L +F    GR  EP+     T F+ +  ++I +L+ I P I+ F+L  Y+ +N   F   L+    WRP +++++  LSL G + C+ IM L+ W  ++V+ A+
Sbjct:  334 SVFAIFFPSVTGIQAGANISGDLKDPASAIPKGTLLALLISMVSYTLMVLFAGGGALRDASGNITDLLIVNGTVTDYSSVSLCALNNTCEYGLHNSYSVMQLMSAWGPF---IYGGCWAATLSTALTNLLSVPRLIQALGVDRIYPGLIFFSKPYGRHGEPYRGYVLTFFVSLLFLLIADLNTIAPLISNFYLASYALINFCTFHRALVRPLGWRPTFRYYNMWLSLAGFLMCVAIMLLVHWVMSLVTFAI 581          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A1_RAT (Solute carrier family 12 member 1 OS=Rattus norvegicus GN=Slc12a1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.050e-20
Identity = 49/143 (34.27%), Postives = 79/143 (55.24%), Query Frame = 3
Query:  225 FPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR--EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLAL 647
            F  +I  GI  +TL +AL SL  AP++  A+  D+I   L +F    G+  EP    F T  I +  ++I  L++I P I+ FFL  Y+ +N SCF      +P WRP +  ++  +SL G++ C  +MF+I+W   V++  +
Sbjct:  488 FGPLITAGIFSATLSSALASLVSAPKVFQALCKDNIFKGLQFFAKGYGKNNEPLRGYFLTFVIAMAFILIAELNVIAPIISNFFLASYALINFSCFHASYAKSPGWRPAYGIYNMWVSLFGAILCCAVMFVINWWAAVITYVI 630          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A1_MOUSE (Solute carrier family 12 member 1 OS=Mus musculus GN=Slc12a1 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.050e-20
Identity = 49/143 (34.27%), Postives = 79/143 (55.24%), Query Frame = 3
Query:  225 FPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR--EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLAL 647
            F  +I  GI  +TL +AL SL  AP++  A+  D+I   L +F    G+  EP    F T  I +  ++I  L++I P I+ FFL  Y+ +N SCF      +P WRP +  ++  +SL G++ C  +MF+I+W   V++  +
Sbjct:  488 FGPLITAGIFSATLSSALASLVSAPKVFQALCKDNIFKGLQFFAKGYGKNNEPLRGYFLTFVIAMAFILIAELNVIAPIISNFFLASYALINFSCFHASYAKSPGWRPAYGIYNMWVSLFGAILCCAVMFVINWWAAVITYVI 630          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A1_HUMAN (Solute carrier family 12 member 1 OS=Homo sapiens GN=SLC12A1 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.051e-19
Identity = 49/143 (34.27%), Postives = 77/143 (53.85%), Query Frame = 3
Query:  225 FPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR--EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLAL 647
            F  +I  GI  +TL +AL SL  AP++  A+  D+I   L +F    G+  EP      T  I +  ++I  L+ I P I+ FFL  Y+ +N SCF      +P WRP +  ++  +SL G+V C  +MF+I+W   V++  +
Sbjct:  492 FGPLITAGIFSATLSSALASLVSAPKVFQALCKDNIYKALQFFAKGYGKNNEPLRGYILTFLIAMAFILIAELNTIAPIISNFFLASYALINFSCFHASYAKSPGWRPAYGIYNMWVSLFGAVLCCAVMFVINWWAAVITYVI 634          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A1_RABIT (Solute carrier family 12 member 1 OS=Oryctolagus cuniculus GN=SLC12A1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.268e-18
Identity = 48/143 (33.57%), Postives = 76/143 (53.15%), Query Frame = 3
Query:  225 FPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR--EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLAL 647
            F  +I  GI  +TL +AL SL  A ++  A+  D+I   L +F    G+  EP      T  I +  ++I  L+ I P I+ FFL  Y+ +N SCF      +P WRP +  ++  +SL G+V C  +MF+I+W   V++  +
Sbjct:  492 FGPLITAGIFSATLSSALASLVSAAKVFQALCKDNIYKALQFFAKGYGKNNEPLRGYILTFVIAMAFILIAELNTIAPIISNFFLASYALINFSCFHASYAKSPGWRPAYGIYNMWVSLFGAVLCCAVMFVINWWAAVITYVI 634          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: YB85_YEAST (Uncharacterized membrane protein YBR235W OS=Saccharomyces cerevisiae GN=YBR235W PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.052e-18
Identity = 63/220 (28.64%), Postives = 109/220 (49.55%), Query Frame = 3
Query:    6 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXXIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISW-SFTVVSLALAASYI 662
            L G+FFPA  GI AG+  S+ L+   +SIP G           Y + V   G +               I+     VI +G + ++L + +  + GA  +L AIA D+I+P L  F       P  +  FT  +   C +  +++ I   ITM FL+ +  +NL+CFLL +  AP++RP +K+ +   + +G++  +V M ++   S +V+ LA+   ++
Sbjct:  287 LFGVFFPATAGIFAGAGMSSELRKPSKSIPKGTLWGLLFTFICYAVVVFSMGCSIPRRSLYDEVQIIQTIS-SVQWVIFMGEMATSLFSIIVGMLGAAYVLEAIAKDNIIPGLEIF----AHSPLYSLIFTWILTQLC-LFSDVNKIATFITMTFLMTFVVMNLACFLLGISSAPNFRPSFKYFNRYTTAIGALLSVVAMLIVDGISASVLFLAMILLFL 500          
The following BLAST results are available for this feature:
BLAST of FC920710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
S12A2_HUMAN1.285e-2137.31Solute carrier family 12 member 2 OS=Homo sapiens ... [more]
YNSG_SCHPO1.678e-2128.18Uncharacterized transporter C18H10.16 OS=Schizosac... [more]
S12A3_PSEAM1.678e-2136.36Solute carrier family 12 member 3 OS=Pseudopleuron... [more]
S12A2_MOUSE2.192e-2136.57Solute carrier family 12 member 2 OS=Mus musculus ... [more]
NKCL_MANSE1.421e-2028.69Bumetanide-sensitive sodium-(potassium)-chloride c... [more]
S12A1_RAT7.050e-2034.27Solute carrier family 12 member 1 OS=Rattus norveg... [more]
S12A1_MOUSE7.050e-2034.27Solute carrier family 12 member 1 OS=Mus musculus ... [more]
S12A1_HUMAN2.051e-1934.27Solute carrier family 12 member 1 OS=Homo sapiens ... [more]
S12A1_RABIT2.268e-1833.57Solute carrier family 12 member 1 OS=Oryctolagus c... [more]
YB85_YEAST5.052e-1828.64Uncharacterized membrane protein YBR235W OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionC32012A11EF RVDevelop1 Citrus clementina cDNA clone C32012A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920710 ID=FC920710; Name=FC920710; organism=Citrus clementina; type=EST; length=674bp
ATGCATTGGTCGGTCTATTTTTTCCAGCTGTAACGGGAATCATGGCAGGG
TCAAATCGTTCAGCCTCACTGAAAGATACCCAACGTTCAATCCCCATTGG
AACTTTGGCTGCAACTCTTACAACTACTGCATTATATGTGATTTCTGTGT
TGTTATTTGGAGCGGCGGCAACTAGAGAGGAGCTTTTGACAGACAGGCTT
CTTACTGCTACAATCGCTTGGCCTTTCCCAGCAGTTATTCACATAGGGAT
TATTCTTTCAACCTTAGGTGCTGCTCTTCAGAGCCTGACAGGTGCTCCGC
GCTTGCTTGCAGCAATAGCCAATGATGATATTCTACCTGTTCTTAACTAC
TTTAAGGTTGCAGAGGGGCGTGAGCCACACATAGCTACATTCTTCACGGC
ATTCATCTGTATCGGATGTGTCATAATTGGGAATCTGGACCTTATCACAC
CGACAATAACAATGTTTTTTCTTCTGTGTTATTCGGGTGTGAACTTATCT
TGCTTCCTTCTGGATCTTCTCGATGCTCCTAGTTGGCGTCCTCGGTGGAA
ATTTCACCACTGGAGCCTATCACTTCTTGGATCTGTTTTTTGTATTGTGA
TCATGTTCTTGATCTCTTGGTCATTTACGGTGGTGTCTCTGGCCCTTGCA
GCCTCATATATTATTACGTGTGCC
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