FC920710

Overview
NameFC920710
Unique NameFC920710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14181 contig Ccv1_Contig14181:1..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A3_MOUSE (Solute carrier family 12 member 3 OS=Mus musculus GN=Slc12a3 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.618e-18
Identity = 45/143 (31.47%), Postives = 78/143 (54.55%), Query Frame = 3
Query:  225 FPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEG--REPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLAL 647
            F  +I  GI  +TL +AL  L  A ++   +  D + P++ +F    G  REP         I +  +II  L+ I P I+ FFL  Y+ +N SCF   + ++P WRP ++++    +L G+V  +VIMFL++W   ++++ +
Sbjct:  451 FAPLITAGIFGATLSSALACLVSAAKVFQCLCEDQLYPLIGFFGKGYGKNREPVRGYLLAYAIAVAFIIIAELNTIAPIISNFFLCSYALINFSCFHASITNSPGWRPSFRYYSKWAALFGAVISVVIMFLLTWWAALIAIGV 593          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A8_MOUSE (Solute carrier family 12 member 8 OS=Mus musculus GN=Slc12a8 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.126e-17
Identity = 54/182 (29.67%), Postives = 89/182 (48.90%), Query Frame = 3
Query:   12 GLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXXIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEG--REPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLD---APSWRP 542
            G+FFPA TG+MAG N    L+D   S+P+G           Y+I   L GA                ++     +  +G+ +S+L + +  L GAPR+L  IA D ++P L +    +G  + P  A   T+ + +  V++G ++++ P +T+ F+L Y  V+ S F L +     APS  P
Sbjct:  237 GVFFPAATGVMAGFNMGGDLRDPADSVPLGSLAAVGVSWFLYIIFAFLLGAVCTREALRSDFLIAEKVSL-VGFLFLLGLYISSLASCMGGLYGAPRILQCIAQDKVIPALAFLANGKGPNKTPVAAICLTSLVTMAFVLVGQVNVLAPVVTINFMLTYIMVDYSYFALSMAHCGLAPSPEP 417          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A8_XENLA (Solute carrier family 12 member 8 OS=Xenopus laevis GN=slc12a8 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.920e-17
Identity = 51/167 (30.54%), Postives = 84/167 (50.30%), Query Frame = 3
Query:   12 GLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXXIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEG--REPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCF 506
            G+FFPA TG+M G N S  L+    +IP+G           YV+ V L GA                ++     +  +G+ +S+L + +  L GAPR+L  IA + ++P L++    +G  + P  A F T  + +  V IG ++++ P +T+ F+L YS V+ S F
Sbjct:  252 GVFFPAATGVMVGFNMSGDLQRPSINIPLGSLAAIGTSWFLYVVFVFLLGAICTREFLRYEFMIAEKVSL-VGGLFLLGLYISSLASCMGGLYGAPRILQCIAQEKVIPALSFLGRGKGPNKTPVAAIFITGLLTMAFVFIGQVNVLAPIVTINFMLTYSAVDYSYF 417          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A3_RAT (Solute carrier family 12 member 3 OS=Rattus norvegicus GN=Slc12a3 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.920e-17
Identity = 44/143 (30.77%), Postives = 78/143 (54.55%), Query Frame = 3
Query:  225 FPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR--EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLAL 647
            F  +I  GI  +TL +AL  L  A ++   +  D + P++ +F    G+  EP         I +  +II  L+ I P I+ FFL  Y+ +N SCF   + ++P WRP ++++    +L G+V  +VIMFL++W   ++++ +
Sbjct:  451 FAPLITAGIFGATLSSALACLVSAAKVFQCLCEDQLYPLIGFFGKGYGKNKEPVRGYLLAYAIAVAFIIIAELNTIAPIISNFFLCSYALINFSCFHASITNSPGWRPSFRYYSKWAALFGAVISVVIMFLLTWWAALIAIGV 593          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A3_HUMAN (Solute carrier family 12 member 3 OS=Homo sapiens GN=SLC12A3 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.920e-17
Identity = 43/143 (30.07%), Postives = 79/143 (55.24%), Query Frame = 3
Query:  225 FPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR--EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLAL 647
            F  +I  GI  +TL +AL  L  A ++   +  D + P++ +F    G+  EP         I +  +II  L+ I P I+ FFL  Y+ +N SCF   + ++P WRP +++++   +L G++  +VIMFL++W   ++++ +
Sbjct:  453 FAPLITAGIFGATLSSALACLVSAAKVFQCLCEDQLYPLIGFFGKGYGKNKEPVRGYLLAYAIAVAFIIIAELNTIAPIISNFFLCSYALINFSCFHASITNSPGWRPSFQYYNKWAALFGAIISVVIMFLLTWWAALIAIGV 595          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A8_HUMAN (Solute carrier family 12 member 8 OS=Homo sapiens GN=SLC12A8 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.066e-16
Identity = 49/171 (28.65%), Postives = 83/171 (48.54%), Query Frame = 3
Query:   12 GLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXXIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEG--REPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDL 518
            G+FFPA TG+MAG N    L++   SIP G           Y++ V L GA                ++     +  +G+ +S+L + +  L GAPR+L  IA + ++P L      +G  + P  A   T+ + +  V +G ++++ P +T+ F+L Y  V+ S F L +
Sbjct:  238 GVFFPAATGVMAGFNMGGDLREPAASIPPGSLAAVGISWFLYIVFVFLLGAICTREALRYDFLIAEKVSL-MGFLFLLGLYISSLASCMGGLYGAPRILQCIAQEKVIPALACLGQGKGPNKTPVAAICLTSLVTMAFVFVGQVNVLAPIVTINFMLTYVAVDYSYFSLSM 407          
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A8_RAT (Solute carrier family 12 member 8 OS=Rattus norvegicus GN=Slc12a8 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.424e-12
Identity = 46/172 (26.74%), Postives = 81/172 (47.09%), Query Frame = 3
Query:   12 GLFFPAVTGIMAGSNRSASLKD-TQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXXIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEG--REPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDL 518
            G+FFPA TG+MAG N    L++   +  P              +I   L GA                ++     +  +G+ +S+L + +  L GAPR+L  IA D ++P L +    +G  + P  A   T+ + +  V++G ++++ P +T+ F+L Y  V+ S F L +
Sbjct:  237 GVFFPAATGVMAGFNMGGDLREPADQHTPRLPSSCWVSRGFSNIIFAFLLGAVCTREALRSDFLIAEKVSL-VGFLFLLGLYISSLASCMGGLYGAPRILQCIAQDKVIPALAFLGNGKGPNKTPVAAICLTSLVTMAFVLVGQVNVLAPVVTINFMLTYIAVDYSYFALSM 407          
The following BLAST results are available for this feature:
BLAST of FC920710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
S12A3_MOUSE8.618e-1831.47Solute carrier family 12 member 3 OS=Mus musculus ... [more]
S12A8_MOUSE1.126e-1729.67Solute carrier family 12 member 8 OS=Mus musculus ... [more]
S12A8_XENLA1.920e-1730.54Solute carrier family 12 member 8 OS=Xenopus laevi... [more]
S12A3_RAT1.920e-1730.77Solute carrier family 12 member 3 OS=Rattus norveg... [more]
S12A3_HUMAN1.920e-1730.07Solute carrier family 12 member 3 OS=Homo sapiens ... [more]
S12A8_HUMAN8.066e-1628.65Solute carrier family 12 member 8 OS=Homo sapiens ... [more]
S12A8_RAT1.424e-1226.74Solute carrier family 12 member 8 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionC32012A11EF RVDevelop1 Citrus clementina cDNA clone C32012A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920710 ID=FC920710; Name=FC920710; organism=Citrus clementina; type=EST; length=674bp
ATGCATTGGTCGGTCTATTTTTTCCAGCTGTAACGGGAATCATGGCAGGG
TCAAATCGTTCAGCCTCACTGAAAGATACCCAACGTTCAATCCCCATTGG
AACTTTGGCTGCAACTCTTACAACTACTGCATTATATGTGATTTCTGTGT
TGTTATTTGGAGCGGCGGCAACTAGAGAGGAGCTTTTGACAGACAGGCTT
CTTACTGCTACAATCGCTTGGCCTTTCCCAGCAGTTATTCACATAGGGAT
TATTCTTTCAACCTTAGGTGCTGCTCTTCAGAGCCTGACAGGTGCTCCGC
GCTTGCTTGCAGCAATAGCCAATGATGATATTCTACCTGTTCTTAACTAC
TTTAAGGTTGCAGAGGGGCGTGAGCCACACATAGCTACATTCTTCACGGC
ATTCATCTGTATCGGATGTGTCATAATTGGGAATCTGGACCTTATCACAC
CGACAATAACAATGTTTTTTCTTCTGTGTTATTCGGGTGTGAACTTATCT
TGCTTCCTTCTGGATCTTCTCGATGCTCCTAGTTGGCGTCCTCGGTGGAA
ATTTCACCACTGGAGCCTATCACTTCTTGGATCTGTTTTTTGTATTGTGA
TCATGTTCTTGATCTCTTGGTCATTTACGGTGGTGTCTCTGGCCCTTGCA
GCCTCATATATTATTACGTGTGCC
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