FC920713

Overview
NameFC920713
Unique NameFC920713
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length522
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15198 contig Ccv1_Contig15198:488..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_CHLAT (Pyruvate dehydrogenase E1 component subunit beta OS=Chlorokybus atmophyticus GN=pdhB PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 5.336e-60
Identity = 111/173 (64.16%), Postives = 133/173 (76.88%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL*ERIPDEE 521
            +EEM+R+  V  +GED+GHYGGSYKVT+GL  KYG  RV+DTPIAE SF G  +GAA TGL P+VEGMNM F+LLA++QISNN GML  TSGG F              QLGAEHSQRLESYFQS+PG+Q+V CSTPYNAKGL+K+AIRS+NP++  EHVLLYNL   +PD +
Sbjct:   15 DEEMEREKRVVLIGEDIGHYGGSYKVTQGLYGKYGKHRVIDTPIAEYSFVGAAVGAAATGLIPVVEGMNMAFILLAYSQISNNMGMLCATSGGHFQVPMVLRGPGGIGKQLGAEHSQRLESYFQSVPGLQIVTCSTPYNAKGLLKSAIRSKNPILFIEHVLLYNLKGEVPDND 187          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_DICDI (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 4.860e-37
Identity = 76/173 (43.93%), Postives = 108/173 (62.43%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL*ERIPDEE 521
            +EE+ RD  VF MGE+V  Y G+YK+TKGL DKYG  R++DTPI E  F G+G+GAAM G RPI+E M   F + A + I N+    HY SGG+                +GA+HSQ   +++ S+PG+++VA  +  + +GL+K+AIR +NPV+  E  LLYN    + D+E
Sbjct:   40 DEELARDEKVFIMGEEVAQYNGAYKITKGLFDKYGGDRIIDTPITEAGFAGIGVGAAMAGTRPIIEFMTFNFAMQAIDHIINSSAKTHYMSGGKVFNPIVWRGPNGPPTAVGAQHSQCFAAWYGSVPGLKVVAPWSAADHRGLLKSAIRDDNPVVYLESELLYNYKFDLSDQE 212          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 3.150e-36
Identity = 74/163 (45.40%), Postives = 104/163 (63.80%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY 491
            +EEM  DP VF MGE+VG Y G+YK+TKGL +KYG  RV DTPI E  FTG+G+GAA  GL+P+VE M   F + A + I N+    +Y S GQ                +GA+HSQ   +++ S+PG++++A  +  +A+GL+KAAIR  +PV+  E+ LLY
Sbjct:   47 DEEMSADPKVFVMGEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLENELLY 209          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 4.114e-36
Identity = 74/162 (45.68%), Postives = 105/162 (64.81%), Query Frame = 3
Query:    6 EEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY 491
            EEM RD  VF MGE+V  Y G+YKVT+GL  ++G  RV+DTPI+E  F+G+G+GAAM GLRP++E M M F + A + I N+    HY SGGQ               ++GA+H+Q    ++ ++PG+ ++A     +AKGL+KAAIRS++PV+  E  LLY
Sbjct:  151 EEMRRDDRVFVMGEEVAEYQGAYKVTQGLLQEFGARRVVDTPISEYGFSGIGVGAAMEGLRPVIEFMTMNFSMQAIDHIINSAAKTHYMSGGQVRCPIVFRGPNGAAPRVGAQHTQNFGPWYAAVPGLVVLAPYDAIDAKGLLKAAIRSDDPVVFLECELLY 312          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_YEAST (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.563e-35
Identity = 72/162 (44.44%), Postives = 104/162 (64.20%), Query Frame = 3
Query:    6 EEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY 491
            EE+DRD  VF +GE+V  Y G+YKV+KGL D++G+ RV+DTPI E  FTG+ +GAA+ GL+PIVE M+  F + A + + N+    HY SGG                 +GA+HSQ    ++ SIPG++++   +  +A+GL+KAAIR  NPV+  E+ LLY
Sbjct:   51 EELDRDDDVFLIGEEVAQYNGAYKVSKGLLDRFGERRVVDTPITEYGFTGLAVGAALKGLKPIVEFMSFNFSMQAIDHVVNSAAKTHYMSGGTQKCQMVFRGPNGAAVGVGAQHSQDFSPWYGSIPGLKVLVPYSAEDARGLLKAAIRDPNPVVFLENELLY 212          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_RHIME (Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti GN=pdhB PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 4.548e-35
Identity = 77/169 (45.56%), Postives = 104/169 (61.54%), Query Frame = 3
Query:    6 EEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL*ERIP 512
            EEM  +  VF MGE+V  Y G+YKVT+GL  ++G  RV+DTPI E+ F G+G+GAAMTGLRPIVE M   F + A +QI N+     Y SGGQ               ++ A+HSQ   +++  IPG+++V   T  +AKGL+KAAIR  NPVI  E+ +LY     +P
Sbjct:  150 EEMRANEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVVDTPITEHGFAGVGVGAAMTGLRPIVEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGAPIVFRGPSGAAARVAAQHSQCYAAWYSHIPGLKVVMPYTAADAKGLLKAAIRDPNPVIFLENEILYGQSFEVP 318          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODBB_BACSU (2-oxoisovalerate dehydrogenase subunit beta OS=Bacillus subtilis GN=bfmBAB PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.548e-35
Identity = 73/165 (44.24%), Postives = 104/165 (63.03%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL 497
            +EEM+RD  VF +GEDVG  GG +K T GL +++G+ RV+DTP+AE++  G+GIGAAM G+RPI E     F++ A NQI +    + Y S   ++                  HSQ +E+ F + PG+++V  STPY+AKGL+KAA+R E+PV+ FEH   Y L
Sbjct:   15 KEEMERDSRVFVLGEDVGRKGGVFKATAGLYEQFGEERVMDTPLAESAIAGVGIGAAMYGMRPIAEMQFADFIMPAVNQIISEAAKIRYRSNNDWSCPIVVRAPYGGGVHGALYHSQSVEAIFANQPGLKIVMPSTPYDAKGLLKAAVRDEDPVLFFEHKRAYRL 179          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_RICTY (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia typhi GN=pdhB PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.758e-35
Identity = 75/171 (43.86%), Postives = 103/171 (60.23%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL*ERIPD 515
            +EEM RD  VF +GE+V  Y G+YKVT+GL +++G  RV+DTPI E  F G+ +GAA  GLRPIVE M   F + AF+ I N+    HY SGGQ               ++ A+HSQ   + +  IPG+++VA  +  + KGLM  AIR +NPVI  E+ +LY     +PD
Sbjct:   14 QEEMLRDDKVFVIGEEVAEYQGAYKVTQGLLEQFGSKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSFDVPD 184          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_RICPR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia prowazekii GN=pdhB PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.758e-35
Identity = 75/171 (43.86%), Postives = 103/171 (60.23%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL*ERIPD 515
            +EEM RD  VF +GE+V  Y G+YKVT+GL +++G  RV+DTPI E  F G+ +GAA  GLRPIVE M   F + AF+ I N+    HY SGGQ               ++ A+HSQ   + +  IPG+++VA  +  + KGLM  AIR +NPVI  E+ +LY     +PD
Sbjct:   14 QEEMLRDEKVFVIGEEVAEYQGAYKVTQGLLEQFGSKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSFDVPD 184          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_RICFE (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia felis GN=pdhB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.323e-34
Identity = 73/163 (44.79%), Postives = 100/163 (61.35%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY 491
            +EEM RD  VF MGE+V  Y G+YKVT+GL +++G  RV+DTPI E  F G+ +GAA  GLRPIVE M   F + AF+ I N+    HY SGGQ               ++ A+HSQ   + +  +PG+++VA  +  + KGLM  AIR +NPVI  E+ +LY
Sbjct:   14 QEEMIRDDKVFVMGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQAKCPIVFRGPNGAASRVAAQHSQNYTACYSHVPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILY 176          
The following BLAST results are available for this feature:
BLAST of FC920713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_CHLAT5.336e-6064.16Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_DICDI4.860e-3743.93Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ARATH3.150e-3645.40Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ZYMMO4.114e-3645.68Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_YEAST1.563e-3544.44Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RHIME4.548e-3545.56Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_BACSU4.548e-3544.242-oxoisovalerate dehydrogenase subunit beta OS=Bac... [more]
ODPB_RICTY7.758e-3543.86Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICPR7.758e-3543.86Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICFE1.323e-3444.79Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionC32012B02EF RVDevelop1 Citrus clementina cDNA clone C32012B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920713 ID=FC920713; Name=FC920713; organism=Citrus clementina; type=EST; length=522bp
TGGAAGAAGAAATGGACAGAGATCCACATGTTTTTCCCATGGGTGAAGAT
GTTGGTCACTATGGGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGATAA
GTATGGGGATCTCAGGGTTCTTGATACCCCTATTGCTGAGAACTCTTTCA
CTGGTATGGGCATTGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTGAA
GGAATGAACATGGGATTTCTTCTTTTAGCTTTCAACCAGATCTCCAACAA
CTGTGGTATGCTCCACTATACTTCTGGTGGGCAGTTTACCATACCAATAG
TTATCCGTGGACCTGGTGGAGTTGGCCGACAACTTGGAGCTGAGCATTCC
CAACGCCTTGAGTCATATTTTCAATCAATCCCCGGAATTCAAATGGTGGC
ATGCTCGACCCCATACAATGCCAAGGGCTTGATGAAAGCTGCAATCCGAA
GTGAGAACCCAGTTATACTTTTCGAGCATGTGTTGCTTTACAACCTCTAG
GAAAGGATTCCAGATGAGGAAT
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