FC920713

Overview
NameFC920713
Unique NameFC920713
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length522
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15198 contig Ccv1_Contig15198:488..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_RICCN (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia conorii GN=pdhB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.948e-34
Identity = 72/163 (44.17%), Postives = 100/163 (61.35%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY 491
            +EEM RD  VF +GE+V  Y G+YKVT+GL +++G  RV+DTPI E  F G+ +GAA  GLRPIVE M   F + AF+ I N+    HY SGGQ               ++ A+HSQ   + +  IPG+++VA  +  + KGLM  AIR +NPV+  E+ +LY
Sbjct:   14 QEEMIRDDKVFVIGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVVFLENEILY 176          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_BOVIN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 5.029e-34
Identity = 70/172 (40.70%), Postives = 108/172 (62.79%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL*ERIPDE 518
            +EE++RD  VF +GE+V  Y G+YKV++GL  KYGD R++DTPI+E  F G+ +GAAM GLRPI E M   F + A +Q+ N+    +Y SGG  +              + A+HSQ   +++   PG+++V+  +  +AKGL+K+AIR  NPV++ E+ L+Y +   +P E
Sbjct:   44 DEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQSVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPSE 215          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_RICBR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia bellii (strain RML369-C) GN=pdhB PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.568e-34
Identity = 73/163 (44.79%), Postives = 99/163 (60.74%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY 491
            +EEM RD  VF MGE+V  Y G+YKVT+GL +++G  RV+DTPI E  F G+ +GAA  GLRPIVE M   F + A + I N+    HY SGGQ               ++ A+HSQ   + +  IPG+++VA  +  + KGLM  AIR +NPVI  E+ +LY
Sbjct:   14 QEEMIRDDKVFVMGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAMDHIVNSAAKTHYMSGGQVRCPIVFRGPNGAASRVAAQHSQNYAACYSYIPGLKVVAPYSAEDHKGLMITAIRDDNPVIFLENEILY 176          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_PEA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 8.578e-34
Identity = 73/161 (45.34%), Postives = 100/161 (62.11%), Query Frame = 3
Query:    9 EMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY 491
            EM  D  VF MGE+VG Y G+YKVTKGL +KYG  RVLDTPI E  FTG+G+GAA  GL+P+VE M   F + A + I N+    +Y S GQ +              +GA+HS    S++ S PG++++   +  +A+GL+KAAIR  +PV+  E+ LLY
Sbjct:   39 EMSADSKVFLMGEEVGEYQGAYKVTKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGLNGDAAGVGAQHSHCYASWYGSCPGLKVLVPHSAEDARGLLKAAIRDPDPVVFLENELLY 199          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODBB_THET8 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 8.578e-34
Identity = 75/174 (43.10%), Postives = 106/174 (60.92%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NL*ERIPDEE 521
            +EEM +DP V  +GEDVG  GG + VT+GL  KYG  RV+DTP++E +  G  +G A  GLRP+ E     ++   F+Q+ +    L Y SGGQFT             + G  HSQ  E++F    G+++VA STPY+AKGL+KAAIR E+PV+  E   LY ++ E +P+E+
Sbjct:   15 DEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKEEVPEED 188          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODBB_THET2 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1756 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 8.578e-34
Identity = 75/174 (43.10%), Postives = 106/174 (60.92%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NL*ERIPDEE 521
            +EEM +DP V  +GEDVG  GG + VT+GL  KYG  RV+DTP++E +  G  +G A  GLRP+ E     ++   F+Q+ +    L Y SGGQFT             + G  HSQ  E++F    G+++VA STPY+AKGL+KAAIR E+PV+  E   LY ++ E +P+E+
Sbjct:   15 DEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKEEVPEED 188          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_PONAB (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pongo abelii GN=PDHB PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.496e-33
Identity = 70/172 (40.70%), Postives = 105/172 (61.05%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL*ERIPDE 518
            +EE++RD  VF +GE+V  Y G+YKV++GL  KYGD R++DTPI+E  F G+ +GAAM GLRPI E M   F + A +Q+ N+    +Y SGG                 + A+HSQ   +++   PG+++V+     +AKGL+K+AIR  NPV++ E+ L+Y +    P E
Sbjct:   44 DEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPE 215          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_HUMAN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens GN=PDHB PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 2.496e-33
Identity = 70/172 (40.70%), Postives = 105/172 (61.05%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL*ERIPDE 518
            +EE++RD  VF +GE+V  Y G+YKV++GL  KYGD R++DTPI+E  F G+ +GAAM GLRPI E M   F + A +Q+ N+    +Y SGG                 + A+HSQ   +++   PG+++V+     +AKGL+K+AIR  NPV++ E+ L+Y +    P E
Sbjct:   44 DEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPE 215          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_RAT (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 3.260e-33
Identity = 69/172 (40.12%), Postives = 106/172 (61.63%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL*ERIPDE 518
            +EE++RD  VF +GE+V  Y G+YKV++GL  KYGD R++DTPI+E  F G+ +GAAM GLRPI E M   F + A +Q+ N+    +Y S G                 + A+HSQ   +++   PG+++V+     +AKGL+K+AIR +NPV++ E+ L+Y +   +P E
Sbjct:   44 DEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDDNPVVMLENELMYGVAFELPTE 215          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_SCHPO (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.257e-33
Identity = 71/163 (43.56%), Postives = 99/163 (60.74%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY 491
            EEEM RD  VF +GE+V  Y G+YK+++GL DK+G  RV+DTPI E  FTG+  GAA  GLRPI E M   F + A + I N+     Y SGG                 + A+HSQ    ++ SIPG+++V+  +  +A+GL+KAAIR  NPV++ E+ +LY
Sbjct:   49 EEEMKRDDRVFLIGEEVAQYNGAYKISRGLLDKFGPKRVIDTPITEMGFTGLATGAAFAGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGGIQACPIVFRGPNGPAAAVAAQHSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLENEILY 211          
The following BLAST results are available for this feature:
BLAST of FC920713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_RICCN2.948e-3444.17Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BOVIN5.029e-3440.70Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RICBR6.568e-3444.79Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PEA8.578e-3445.34Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODBB_THET88.578e-3443.102-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODBB_THET28.578e-3443.102-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODPB_PONAB2.496e-3340.70Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_HUMAN2.496e-3340.70Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RAT3.260e-3340.12Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_SCHPO4.257e-3343.56Pyruvate dehydrogenase E1 component subunit beta, ... [more]

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Properties
Property NameValue
Genbank descriptionC32012B02EF RVDevelop1 Citrus clementina cDNA clone C32012B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920713 ID=FC920713; Name=FC920713; organism=Citrus clementina; type=EST; length=522bp
TGGAAGAAGAAATGGACAGAGATCCACATGTTTTTCCCATGGGTGAAGAT
GTTGGTCACTATGGGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGATAA
GTATGGGGATCTCAGGGTTCTTGATACCCCTATTGCTGAGAACTCTTTCA
CTGGTATGGGCATTGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTGAA
GGAATGAACATGGGATTTCTTCTTTTAGCTTTCAACCAGATCTCCAACAA
CTGTGGTATGCTCCACTATACTTCTGGTGGGCAGTTTACCATACCAATAG
TTATCCGTGGACCTGGTGGAGTTGGCCGACAACTTGGAGCTGAGCATTCC
CAACGCCTTGAGTCATATTTTCAATCAATCCCCGGAATTCAAATGGTGGC
ATGCTCGACCCCATACAATGCCAAGGGCTTGATGAAAGCTGCAATCCGAA
GTGAGAACCCAGTTATACTTTTCGAGCATGTGTTGCTTTACAACCTCTAG
GAAAGGATTCCAGATGAGGAAT
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