FC920713

Overview
NameFC920713
Unique NameFC920713
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length522
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15198 contig Ccv1_Contig15198:488..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_MOUSE (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 7.262e-33
Identity = 69/172 (40.12%), Postives = 105/172 (61.05%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL*ERIPDE 518
            +EE++RD  VF +GE+V  Y G+YKV++GL  KYGD R++DTPI+E  F G+ +GAAM GLRPI E M   F + A +Q+ N+    +Y S G                 + A+HSQ   +++   PG+++V+     +AKGL+K+AIR  NPV++ E+ L+Y +   +P E
Sbjct:   44 DEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVMLENELMYGVAFELPAE 215          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_CAEEL (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 7.262e-33
Identity = 71/172 (41.28%), Postives = 102/172 (59.30%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL*ERIPDE 518
            +EE+ RD  VF MGE+V  Y G+YK++KGL  K+GD RV+DTPI E  F G+ +GAA  GLRPI E M   F + A +QI N+    +Y S G+                + A+HSQ   +++   PG+++V   +  +AKGL+KAAIR +NPV+  E+ +LY     + DE
Sbjct:   36 DEEIKRDDRVFLMGEEVAQYDGAYKISKGLWKKHGDKRVVDTPITEMGFAGIAVGAAFAGLRPICEFMTFNFSMQAIDQIINSAAKTYYMSAGRVPVPIVFRGPNGAAAGVAAQHSQDFSAWYAHCPGLKVVCPYSAEDAKGLLKAAIRDDNPVVFLENEILYGQSFPVGDE 207          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_ASCSU (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.618e-32
Identity = 68/165 (41.21%), Postives = 99/165 (60.00%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL 497
            +EE+ RD  VF +GE+V  Y G+YK++KGL  KYGD R+ DTPI E +  G+ +GAAM GLRPI E M+M F +   + I N+    HY S G+F               +  +HSQ   ++F   PG+++V      +A+GL+KAA+R +NPVI  E+ +LY +
Sbjct:   45 DEEIKRDDRVFLIGEEVAQYDGAYKISKGLWKKYGDGRIWDTPITEMAIAGLSVGAAMNGLRPICEFMSMNFSMQGIDHIINSAAKAHYMSAGRFHVPIVFRGANGAAVGVAQQHSQDFTAWFMHCPGVKVVVPYDCEDARGLLKAAVRDDNPVICLENEILYGM 209          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ACOB_RALEH (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoB PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 1.674e-29
Identity = 73/181 (40.33%), Postives = 101/181 (55.80%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDV----------GHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL*ERIPD 515
            ++EM RDP V  +GED+            +GG   VTKGL  K+GD R+LDTP++E+++ G  IGAA  G+RPI E M + F+ + F+QI N      Y  GG+               +  A+HSQ L   F  IPG+++V  STPY+ KGL+  AIR  +PVI  EH  LY L   +P+
Sbjct:   16 DQEMTRDPSVIMLGEDIVGGAGADGEKDAWGGVLGVTKGLYAKHGD-RLLDTPLSESAYVGAAIGAAACGMRPIAELMFIDFMGVCFDQIFNQAAKFRYMFGGKAETPVVIRAMVGAGFRAAAQHSQMLTPLFTHIPGLKVVCPSTPYDTKGLLIQAIRDNDPVIFCEHKNLYGLEGEVPE 195          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_ACHLA (Pyruvate dehydrogenase E1 component subunit beta OS=Acholeplasma laidlawii GN=pdhB PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.385e-28
Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY 491
            ++ M++D  +   GED G  GG ++VT GL  KYG+ RV DTPIAE++  G  +G A+ GL+PI E    GF+   +  +  +   +   S GQFT             +    HS+ LE  F SIPG+++V  STPY+AKGL+ AAI   +PV+  E   +Y
Sbjct:   15 DQAMEKDESIVVFGEDAGFEGGVFRVTAGLQKKYGETRVFDTPIAESAIVGSAVGMAINGLKPIAEIQFDGFIFPGYTDLVTHAARMRNRSRGQFTVPMVLRLPHGGGIRALEHHSEALEVLFGSIPGLKVVTPSTPYDAKGLLLAAINDPDPVVFLEPKRIY 177          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_BACSU (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus subtilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.200e-27
Identity = 62/172 (36.05%), Postives = 96/172 (55.81%), Query Frame = 3
Query:    9 EMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NL*ERIPDEE 521
            E+  D +V   GEDVG  GG ++ T+GL  ++G+ RV DTP+AE+   G+ +G  + G RP++E    GF+    + +S     + Y SGG++T                  H+  LE      PGI++V  STPY+AKGL+ +AIR  +PV+  EH+ LY +  + +P+EE
Sbjct:   17 ELKNDENVLVFGEDVGVNGGVFRATEGLQKEFGEDRVFDTPLAESGIGGLALGLGLNGFRPVMEIQFFGFVYEVMDSVSGQMARMRYRSGGRWTSPVTIRSPFGGGVHTPELHADSLEGLVAQQPGIKVVIPSTPYDAKGLLISAIRDNDPVVFLEHMKLYRSFRQEVPEEE 188          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_STAES (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.673e-27
Identity = 62/174 (35.63%), Postives = 99/174 (56.90%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NL*ERIPDEE 521
            + E+ RD  V   GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+TG RP++E   +GF+   F++++       + SGG                     H+  LE      PG+++V  S PY+AKGL+ ++I+S +PV+  EH+ LY +  E +P+EE
Sbjct:   15 KSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLAVTGFRPVMEIQFLGFVYEVFDEVAGQIARTRFRSGGTKPAPVTIRTPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQSNDPVVYLEHMKLYRSFREEVPEEE 188          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_STAEQ (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.673e-27
Identity = 62/174 (35.63%), Postives = 99/174 (56.90%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NL*ERIPDEE 521
            + E+ RD  V   GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+TG RP++E   +GF+   F++++       + SGG                     H+  LE      PG+++V  S PY+AKGL+ ++I+S +PV+  EH+ LY +  E +P+EE
Sbjct:   15 KSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLAVTGFRPVMEIQFLGFVYEVFDEVAGQIARTRFRSGGTKPAPVTIRTPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQSNDPVVYLEHMKLYRSFREEVPEEE 188          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_STAAW (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MW2) GN=pdhB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.776e-27
Identity = 63/172 (36.63%), Postives = 96/172 (55.81%), Query Frame = 3
Query:    9 EMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NL*ERIPDEE 521
            E+  D  V   GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+ I+       + SGG  T                  H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY +  E +P+EE
Sbjct:   17 ELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEE 188          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_STAAU (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus GN=pdhB PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.776e-27
Identity = 63/172 (36.63%), Postives = 96/172 (55.81%), Query Frame = 3
Query:    9 EMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NL*ERIPDEE 521
            E+  D  V   GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+ I+       + SGG  T                  H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY +  E +P+EE
Sbjct:   17 ELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEE 188          
The following BLAST results are available for this feature:
BLAST of FC920713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_MOUSE7.262e-3340.12Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CAEEL7.262e-3341.28Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ASCSU1.618e-3241.21Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ACOB_RALEH1.674e-2940.33Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_ACHLA5.385e-2838.65Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BACSU1.200e-2736.05Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAES2.673e-2735.63Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAEQ2.673e-2735.63Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAW7.776e-2736.63Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAU7.776e-2736.63Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionC32012B02EF RVDevelop1 Citrus clementina cDNA clone C32012B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920713 ID=FC920713; Name=FC920713; organism=Citrus clementina; type=EST; length=522bp
TGGAAGAAGAAATGGACAGAGATCCACATGTTTTTCCCATGGGTGAAGAT
GTTGGTCACTATGGGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGATAA
GTATGGGGATCTCAGGGTTCTTGATACCCCTATTGCTGAGAACTCTTTCA
CTGGTATGGGCATTGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTGAA
GGAATGAACATGGGATTTCTTCTTTTAGCTTTCAACCAGATCTCCAACAA
CTGTGGTATGCTCCACTATACTTCTGGTGGGCAGTTTACCATACCAATAG
TTATCCGTGGACCTGGTGGAGTTGGCCGACAACTTGGAGCTGAGCATTCC
CAACGCCTTGAGTCATATTTTCAATCAATCCCCGGAATTCAAATGGTGGC
ATGCTCGACCCCATACAATGCCAAGGGCTTGATGAAAGCTGCAATCCGAA
GTGAGAACCCAGTTATACTTTTCGAGCATGTGTTGCTTTACAACCTCTAG
GAAAGGATTCCAGATGAGGAAT
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