FC920713

Overview
NameFC920713
Unique NameFC920713
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length522
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15198 contig Ccv1_Contig15198:488..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_STAAS (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MSSA476) GN=pdhB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.776e-27
Identity = 63/172 (36.63%), Postives = 96/172 (55.81%), Query Frame = 3
Query:    9 EMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NL*ERIPDEE 521
            E+  D  V   GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+ I+       + SGG  T                  H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY +  E +P+EE
Sbjct:   17 ELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEE 188          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_STAAR (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MRSA252) GN=pdhB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.776e-27
Identity = 63/172 (36.63%), Postives = 96/172 (55.81%), Query Frame = 3
Query:    9 EMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NL*ERIPDEE 521
            E+  D  V   GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+ I+       + SGG  T                  H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY +  E +P+EE
Sbjct:   17 ELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEE 188          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_STAAN (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain N315) GN=pdhB PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.776e-27
Identity = 63/172 (36.63%), Postives = 96/172 (55.81%), Query Frame = 3
Query:    9 EMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NL*ERIPDEE 521
            E+  D  V   GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+ I+       + SGG  T                  H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY +  E +P+EE
Sbjct:   17 ELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEE 188          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_STAAM (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhB PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.776e-27
Identity = 63/172 (36.63%), Postives = 96/172 (55.81%), Query Frame = 3
Query:    9 EMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NL*ERIPDEE 521
            E+  D  V   GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+ I+       + SGG  T                  H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY +  E +P+EE
Sbjct:   17 ELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEE 188          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_STAAC (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain COL) GN=pdhB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.776e-27
Identity = 63/172 (36.63%), Postives = 96/172 (55.81%), Query Frame = 3
Query:    9 EMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NL*ERIPDEE 521
            E+  D  V   GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+ I+       + SGG  T                  H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY +  E +P+EE
Sbjct:   17 ELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRGPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEE 188          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_BACST (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus stearothermophilus GN=pdhB PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.326e-26
Identity = 63/172 (36.63%), Postives = 94/172 (54.65%), Query Frame = 3
Query:    9 EMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NL*ERIPDEE 521
            E+  DP+V   GEDVG  GG ++ T+GL  ++G+ RV DTP+AE+   G+ IG A+ G RP+ E    GF+    + I      + Y +GG++                   HS  LE      PG+++V  STPY+AKGL+ +AIR  +PVI  EH+ LY +  + +P+ E
Sbjct:   17 ELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSFRQEVPEGE 188          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.732e-26
Identity = 67/160 (41.88%), Postives = 88/160 (55.00%), Query Frame = 3
Query:   12 MDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY 491
            ++RD +V   G+D G  GG ++ TKGL  KYG  RV D PIAENS  G+G+GAA+ GL+PIVE    GF   A  QI  +   +   S G +T             +    HS+ LE+ +  I G++ V  S PY+ KGL  AAI S +PVI FE   LY
Sbjct:   20 LERDQNVVLYGQDAGFEGGVFRATKGLQQKYGSERVWDCPIAENSMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFVHAARIRNRSRGVYTAPLVVRMPMGGGIKALEHHSETLEAIYAQIAGLKTVMPSNPYDTKGLFLAAIESPDPVIFFEPKKLY 179          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ACOB_BACSU (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Bacillus subtilis GN=acoB PE=3 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 2.263e-26
Identity = 69/181 (38.12%), Postives = 93/181 (51.38%), Query Frame = 3
Query:   12 MDRDPHVFPMGEDVGH------------YGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL*ERIPDE 518
            M +D +V  +GEDV              +GG   VTKGL  ++G  RVLDTPI+E  + G  + AA TGLRPI E M   F+   F+Q+ N      Y  GG+               +  A+HSQ L   F SIPG++ V  S PY+AKGL+ AAI   +PV  FE    YN+   +P++
Sbjct:   19 MRKDENVLLIGEDVAGGAAVDHLQDDEAWGGVLGVTKGLVQEFGRTRVLDTPISEAGYMGAAMAAASTGLRPIAELMFNDFIGTCFDQVINQGAKFRYMFGGKAQVPITVRTTYGAGFRAAAQHSQSLYGLFTSIPGLKTVVPSNPYDAKGLLLAAIEDNDPVFFFEDKTSYNMKGEVPED 199          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_MYCPN (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma pneumoniae GN=pdhB PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.955e-26
Identity = 64/160 (40.00%), Postives = 89/160 (55.62%), Query Frame = 3
Query:   12 MDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY 491
            ++RDP+V   G+D G  GG ++ TKGL  KYG+ RV D PIAE +  G+G+GAA+ GL+PIVE    GF   A  QI  +   +   S G +T             +    HS+ LE+ +  I G++ V  S PY+ KGL  AA+ S +PV+ FE   LY
Sbjct:   21 LERDPNVVLYGQDAGFEGGVFRATKGLQKKYGEERVWDCPIAEAAMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFTHAARIRNRSRGVYTCPIIVRMPMGGGIKALEHHSETLEAIYGQIAGLKTVMPSNPYDTKGLFLAAVESPDPVVFFEPKKLY 180          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODBB_DICDI (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Dictyostelium discoideum GN=bkdB PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.955e-26
Identity = 68/161 (42.24%), Postives = 85/161 (52.80%), Query Frame = 3
Query:   12 MDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAE-HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY 491
            M +D      GEDVG +GG ++ T GL DKYG  RV +TP+ E    G  IG A  G  PI E     ++  AF+QI N      Y SGGQF                G   HSQ  ESYF   PG+++V  STP  AKGL+ A+IR ++PVI FE  L+Y
Sbjct:   63 MQKDSKAVVFGEDVG-FGGVFRCTVGLRDKYGASRVFNTPLCEQGIAGFAIGLAAQGATPIAEIQFADYIFPAFDQIVNEAAKYRYRSGGQFDCGSLTIRSPYGAVGHGGHYHSQSPESYFGHTPGLKVVIPSTPIEAKGLLLASIREKDPVIFFEPKLMY 222          
The following BLAST results are available for this feature:
BLAST of FC920713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_STAAS7.776e-2736.63Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAR7.776e-2736.63Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAN7.776e-2736.63Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAM7.776e-2736.63Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAC7.776e-2736.63Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BACST1.326e-2636.63Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MYCGE1.732e-2641.88Pyruvate dehydrogenase E1 component subunit beta O... [more]
ACOB_BACSU2.263e-2638.12Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_MYCPN2.955e-2640.00Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_DICDI2.955e-2642.242-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]

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Properties
Property NameValue
Genbank descriptionC32012B02EF RVDevelop1 Citrus clementina cDNA clone C32012B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920713 ID=FC920713; Name=FC920713; organism=Citrus clementina; type=EST; length=522bp
TGGAAGAAGAAATGGACAGAGATCCACATGTTTTTCCCATGGGTGAAGAT
GTTGGTCACTATGGGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGATAA
GTATGGGGATCTCAGGGTTCTTGATACCCCTATTGCTGAGAACTCTTTCA
CTGGTATGGGCATTGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTGAA
GGAATGAACATGGGATTTCTTCTTTTAGCTTTCAACCAGATCTCCAACAA
CTGTGGTATGCTCCACTATACTTCTGGTGGGCAGTTTACCATACCAATAG
TTATCCGTGGACCTGGTGGAGTTGGCCGACAACTTGGAGCTGAGCATTCC
CAACGCCTTGAGTCATATTTTCAATCAATCCCCGGAATTCAAATGGTGGC
ATGCTCGACCCCATACAATGCCAAGGGCTTGATGAAAGCTGCAATCCGAA
GTGAGAACCCAGTTATACTTTTCGAGCATGTGTTGCTTTACAACCTCTAG
GAAAGGATTCCAGATGAGGAAT
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