FC920713

Overview
NameFC920713
Unique NameFC920713
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length522
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15198 contig Ccv1_Contig15198:488..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODBB_PSEPU (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas putida GN=bkdA2 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.502e-25
Identity = 61/161 (37.89%), Postives = 87/161 (54.04%), Query Frame = 3
Query:   12 MDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN 494
            ++RD +V   G+DVG++GG ++ T+GL  KYG  RV D PI+E+   G  +G    GLRP+VE     +   A +QI +    L Y S G+F                G  HSQ  E+ F  + G++ V  S PY+AKGL+ A+I  ++PVI  E   LYN
Sbjct:   20 LERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYN 180          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODBB_PSEAE (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa GN=bkdA2 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.573e-25
Identity = 60/161 (37.27%), Postives = 86/161 (53.42%), Query Frame = 3
Query:   12 MDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN 494
            ++RD  V   G+DVG++GG ++ T+GL  KYG  RV D PI+E+   G  +G    GLRP+VE     ++  A +Q+ +    L Y S G F                G  HSQ  E+ F  + G++ V  S PY+AKGL+ A I +++PVI  E   LYN
Sbjct:   31 LERDDDVVVFGQDVGYFGGVFRCTEGLQKKYGTSRVFDAPISESGIIGAAVGMGAYGLRPVVEIQFADYVYPASDQLISEAARLRYRSAGDFIVPMTVRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIACIENDDPVIFLEPKRLYN 191          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODBB_BOVIN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.341e-23
Identity = 65/174 (37.36%), Postives = 89/174 (51.15%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGA-EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN-L*ERIPDE 518
            +  + +DP     GEDV  +GG ++ T GL DKYG  RV +TP+ E    G GIG A+TG   I E     ++  AF+QI N      Y SG  F                GA  HSQ  E++F   PGI++V   +P+ AKGL+ + I  +NP I FE  +LY    E++P E
Sbjct:   82 DNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVE 254          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODBB_RAT (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 3.058e-23
Identity = 65/174 (37.36%), Postives = 89/174 (51.15%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGA-EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN-L*ERIPDE 518
            +  + +DP     GEDV  +GG ++ T GL DKYG  RV +TP+ E    G GIG A+TG   I E     ++  AF+QI N      Y SG  F                GA  HSQ  E++F   PGI++V   +P+ AKGL+ + I  +NP I FE  +LY    E++P E
Sbjct:   80 DNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVE 252          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODBB_MOUSE (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 3.058e-23
Identity = 65/174 (37.36%), Postives = 89/174 (51.15%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGA-EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN-L*ERIPDE 518
            +  + +DP     GEDV  +GG ++ T GL DKYG  RV +TP+ E    G GIG A+TG   I E     ++  AF+QI N      Y SG  F                GA  HSQ  E++F   PGI++V   +P+ AKGL+ + I  +NP I FE  +LY    E++P E
Sbjct:   80 DNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVE 252          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODBB_HUMAN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 3.994e-23
Identity = 62/164 (37.80%), Postives = 84/164 (51.22%), Query Frame = 3
Query:    3 EEEMDRDPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGA-EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY 491
            +  + +DP     GEDV  +GG ++ T GL DKYG  RV +TP+ E    G GIG A+TG   I E     ++  AF+QI N      Y SG  F                GA  HSQ  E++F   PGI++V   +P+ AKGL+ + I  +NP I FE  +LY
Sbjct:   82 DNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILY 244          
BLAST of FC920713 vs. ExPASy Swiss-Prot
Match: ODPB_LEIXX (Pyruvate dehydrogenase E1 component subunit beta OS=Leifsonia xyli subsp. xyli GN=pdhB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.897e-23
Identity = 58/157 (36.94%), Postives = 85/157 (54.14%), Query Frame = 3
Query:   21 DPHVFPMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY 491
            DP V  +GEDVG  GG ++VT+GL  ++G  RV+DTP+AE    G  IG AM G RP+VE    GF+   F+QI+     +     G  +                  H +  E+YF    G+++VA STP++A  +++ AI S++PVI FE +  Y
Sbjct:   34 DPKVLILGEDVGPLGGVFRVTEGLQSEFGASRVVDTPLAEAGIVGTAIGLAMRGYRPVVEIQFNGFVFPGFDQITTQLAKMANRHSGAVSMPVVIRIPHGGHIGAVEHHQEAPEAYFAHTAGLRIVAPSTPHDAYWMIQEAIASDDPVIFFEPMSRY 190          
The following BLAST results are available for this feature:
BLAST of FC920713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODBB_PSEPU2.502e-2537.892-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ODBB_PSEAE5.573e-2537.272-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ODBB_BOVIN2.341e-2337.362-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_RAT3.058e-2337.362-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_MOUSE3.058e-2337.362-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_HUMAN3.994e-2337.802-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODPB_LEIXX8.897e-2336.94Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionC32012B02EF RVDevelop1 Citrus clementina cDNA clone C32012B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920713 ID=FC920713; Name=FC920713; organism=Citrus clementina; type=EST; length=522bp
TGGAAGAAGAAATGGACAGAGATCCACATGTTTTTCCCATGGGTGAAGAT
GTTGGTCACTATGGGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGATAA
GTATGGGGATCTCAGGGTTCTTGATACCCCTATTGCTGAGAACTCTTTCA
CTGGTATGGGCATTGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTGAA
GGAATGAACATGGGATTTCTTCTTTTAGCTTTCAACCAGATCTCCAACAA
CTGTGGTATGCTCCACTATACTTCTGGTGGGCAGTTTACCATACCAATAG
TTATCCGTGGACCTGGTGGAGTTGGCCGACAACTTGGAGCTGAGCATTCC
CAACGCCTTGAGTCATATTTTCAATCAATCCCCGGAATTCAAATGGTGGC
ATGCTCGACCCCATACAATGCCAAGGGCTTGATGAAAGCTGCAATCCGAA
GTGAGAACCCAGTTATACTTTTCGAGCATGTGTTGCTTTACAACCTCTAG
GAAAGGATTCCAGATGAGGAAT
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