FC920715

Overview
NameFC920715
Unique NameFC920715
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920715 vs. ExPASy Swiss-Prot
Match: LGUL_SOLLC (Lactoylglutathione lyase OS=Solanum lycopersicum GN=GLX1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.488e-13
Identity = 48/144 (33.33%), Postives = 71/144 (49.31%), Query Frame = 2
Query:  134 VYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQS---------------HFVAELTYNYGV------TSYDIGT----GFGHFAIATEDVYKLVENIRAKGGNVTREP--GPVKGGTTHIAFVKDPDGYIFEL 484
            ++R+ D   +++FY++  GM LL++ D PE K+S  F+G+    S                   ELT+N+G       T Y  G     GFGH  +  +DVYK  E   + G    ++P  G +KG    IAF+KDPDGY  E+
Sbjct:   32 MFRIKDPKVSLEFYSKVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPSDPVERTAWTFSQKSTLELTHNWGTESDPNFTGYHNGNSEPRGFGHIGVTVDDVYKACERFESLGVEFVKKPLDGKMKG----IAFIKDPDGYWIEI 171          
BLAST of FC920715 vs. ExPASy Swiss-Prot
Match: LGUL_PSEPU (Lactoylglutathione lyase OS=Pseudomonas putida GN=gloA PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 53/152 (34.87%), Postives = 71/152 (46.71%), Query Frame = 2
Query:  122 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGF--------GPEQSH-------FVAELTYNYGVT-----SYDIGT----GFGHFAIATEDVYKLVENIRAKGGNVTREPGPVKGGTTHIAFVKDPDGYIFELIQRGPTP 505
            F H + RV D+++++ FYT   G KL+ KRD  E K+S  FL            +  H        V ELT+N+G       +Y  G     GFGH  ++  DV    E   A    V  +     G   H+AF+KDPDGY  E+IQ  PTP
Sbjct:   25 FNHTMLRVKDIEKSLDFYTRVLGFKLVDKRDFVEAKFSLYFLALVDPATIPADDDARHQWMKSIPGVLELTHNHGTERDADFAYHHGNTDPRGFGHICVSVPDVVAACERFEAL--QVPFQKRLSDGRMNHLAFIKDPDGYWVEVIQ--PTP 172          
BLAST of FC920715 vs. ExPASy Swiss-Prot
Match: LGUL_CICAR (Lactoylglutathione lyase OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 50/147 (34.01%), Postives = 69/147 (46.94%), Query Frame = 2
Query:  134 VYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGF-----GPEQ----------SHFVAELTYNYGVTS------YDIGT----GFGHFAIATEDVYKLVENIRAKGGNVTREP--GPVKGGTTHIAFVKDPDGYIFELIQR 493
            ++R+ D   ++ FY+   GM LL++ D PE K+S  F+G+      P                 ELT+N+G  S      Y  G     GFGH  I  +D YK  E  +  G    ++P  G +KG    IAF+KDPDGY  EL  R
Sbjct:   33 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTTEAPSNPVDRTVWTFAQKATIELTHNWGTESDPEFKGYHNGNSDPRGFGHIGITVDDTYKACERFQNLGVEFVKKPDDGKMKG----IAFIKDPDGYWIELFDR 175          
BLAST of FC920715 vs. ExPASy Swiss-Prot
Match: LGUL_SOYBN (Lactoylglutathione lyase OS=Glycine max GN=GLXI PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 48/147 (32.65%), Postives = 69/147 (46.94%), Query Frame = 2
Query:  134 VYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGF-----GPE----------QSHFVAELTYNYGVTS------YDIGT----GFGHFAIATEDVYKLVENIRAKGGNVTREP--GPVKGGTTHIAFVKDPDGYIFELIQR 493
            ++R+ D   ++ FY+   GM LL++ D PE K+S  F+G+      P                 ELT+N+G  S      Y  G     GFGH  +  +D YK  E  +  G    ++P  G +KG    IAF+KDPDGY  E+  R
Sbjct:   32 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYENTAEAPSNPIDKVVWTFSQKATIELTHNWGTESDPEFKGYHNGNSEPRGFGHIGVTVDDTYKACERFQNLGVEFVKKPEDGKMKG----IAFIKDPDGYWIEIFDR 174          
BLAST of FC920715 vs. ExPASy Swiss-Prot
Match: LGUL_PSEAE (Lactoylglutathione lyase OS=Pseudomonas aeruginosa GN=gloA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 47/149 (31.54%), Postives = 67/149 (44.97%), Query Frame = 2
Query:  122 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLG------------------FGPEQSHFVAELTYNYGVTSYDI--------GTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPVKGGTTHIAFVKDPDGYIFELIQ 490
            F H + RV D  R++ FY+   GM+LLR+ D  E ++S  FL                   FG +    V ELT+N+G  S D           GFGH   +  D+    E     G N  +   P+  G  ++AF+ DPDGY  E++Q
Sbjct:   24 FNHTMLRVKDPKRSLDFYSRVLGMRLLRRLDFEEGRFSLYFLAMTRGEEVPDAVDERQRYTFGRQS---VLELTHNWGSESDDSQYHNGNQDPRGFGHICFSVPDLVAACERFETLGVNFVK---PLDRGMKNVAFISDPDGYWVEIVQ 166          
BLAST of FC920715 vs. ExPASy Swiss-Prot
Match: LGUL_BRAJU (Lactoylglutathione lyase OS=Brassica juncea GN=GLY I PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 49/151 (32.45%), Postives = 69/151 (45.70%), Query Frame = 2
Query:  134 VYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQS---------------HFVAELTYNYGVTS------YDIGT----GFGHFAIATEDVYKLVENIRAKGGNVTREPGPVKGGTTHIAFVKDPDGY---IFELIQRGPT 502
            ++RV D   ++ FY+   GM LL++ D  E K+S  FLG+    +                   ELT+N+G  S      Y  G     GFGH  +  +DV+K  E     G    ++P    G   +IAF+KDPDGY   IF+L   G T
Sbjct:   32 MFRVKDPKASLDFYSRVLGMSLLKRLDFSEMKFSLYFLGYEDTSTAPTDPTERTVWTFGRPATIELTHNWGTESDPEFKGYHNGNSEPRGFGHIGVTVDDVHKACERFEQLGVEFVKKPH--DGKMKNIAFIKDPDGYWIEIFDLKTIGTT 180          
BLAST of FC920715 vs. ExPASy Swiss-Prot
Match: LGUL_ARATH (Lactoylglutathione lyase OS=Arabidopsis thaliana GN=At1g08110 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 49/151 (32.45%), Postives = 70/151 (46.36%), Query Frame = 2
Query:  134 VYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGF--------GPEQ-------SHFVAELTYNYGVTS------YDIGT----GFGHFAIATEDVYKLVENIRAKGGNVTREPGPVKGGTTHIAFVKDPDGY---IFELIQRGPT 502
            ++R+ D   ++ FY+   GM LL++ D  E K+S  FLG+         P +            ELT+N+G  S      Y  G     GFGH  +  +DV+K  E     G    ++P    G   +IAF+KDPDGY   IF+L   G T
Sbjct:   32 MFRIKDPKASLDFYSRVLGMSLLKRLDFSEMKFSLYFLGYEDTTTAPTDPTERTVWTFGQPATIELTHNWGTESDPEFKGYHNGNSEPRGFGHIGVTVDDVHKACERFEELGVEFAKKPN--DGKMKNIAFIKDPDGYWIEIFDLKTIGTT 180          
The following BLAST results are available for this feature:
BLAST of FC920715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
LGUL_SOLLC5.488e-1333.33Lactoylglutathione lyase OS=Solanum lycopersicum G... [more]
LGUL_PSEPU2.724e-1234.87Lactoylglutathione lyase OS=Pseudomonas putida GN=... [more]
LGUL_CICAR2.724e-1234.01Lactoylglutathione lyase OS=Cicer arietinum PE=2 S... [more]
LGUL_SOYBN6.068e-1232.65Lactoylglutathione lyase OS=Glycine max GN=GLXI PE... [more]
LGUL_PSEAE3.933e-1131.54Lactoylglutathione lyase OS=Pseudomonas aeruginosa... [more]
LGUL_BRAJU8.761e-1132.45Lactoylglutathione lyase OS=Brassica juncea GN=GLY... [more]
LGUL_ARATH8.761e-1132.45Lactoylglutathione lyase OS=Arabidopsis thaliana G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32012B04EF RVDevelop1 Citrus clementina cDNA clone C32012B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920715 ID=FC920715; Name=FC920715; organism=Citrus clementina; type=EST; length=720bp
GATCTCTCACACTTGCGACTTTCCCCGACTTTCTGAGTGATTCCATATCA
AAATGGCTGAGGCTTCTCCTGCTGCTGCTAATGCCGAGTTGCTGGAATGG
CCAAAGAAAGATAAGCGACGCTTCCTTCATGCTGTGTATCGTGTTGGTGA
TCTTGATCGCACCATCAAATTTTACACTGAATGCTTTGGGATGAAGCTGT
TGAGAAAGAGAGACGTCCCAGAAGAGAAATACTCAAATGCCTTTCTTGGA
TTTGGCCCCGAACAGTCTCACTTTGTTGCGGAGTTAACATACAACTATGG
TGTAACTTCATATGATATTGGAACTGGTTTTGGCCATTTTGCAATTGCAA
CTGAAGATGTTTACAAACTGGTTGAAAACATTCGTGCCAAGGGTGGCAAT
GTCACTAGAGAGCCTGGTCCAGTTAAAGGTGGAACAACTCACATTGCCTT
TGTGAAGGATCCCGATGGTTATATTTTTGAACTCATCCAGAGAGGTCCAA
CTCCTGAACCACTCTGTCAAGTAATGCTTCGCGCTGGCGATCTTGGTCGC
TCCATCAAGTTCTATGAAAAGGCTTTGGGGATGAAACTGTTAAGGACAGT
TGATAAACCTGAATACAAGTACACCCTGGCCATGCTTGGATATGCTGAGG
AAGATCAGACTACTGTTCTGGAGTTAACTTTATATTATGGTGTGACTGAA
TATACCNAGGGAATGCATAT
back to top