FC920723

Overview
NameFC920723
Unique NameFC920723
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920723_ssr48 microsatellite FC920723_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9360 contig Ccv1_Contig9360:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 62/132 (46.97%), Postives = 80/132 (60.61%), Query Frame = 3 
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G     H   + A+ A ++VL+G  E YRI
Sbjct:   45 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRI 172
[Close]
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 60/132 (45.45%), Postives = 77/132 (58.33%), Query Frame = 3 
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYGPDR  +L        + P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   K G   G EAVWFK G+ +     L+Y G     H   + A+ A ++VL+G  E YR+
Sbjct:   48 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRV 175
[Close]
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 62/132 (46.97%), Postives = 80/132 (60.61%), Query Frame = 3 
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G     H   + A+ A ++VL+G  E YRI
Sbjct:   49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRI 176
[Close]
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.595e-23
Identity = 60/132 (45.45%), Postives = 77/132 (58.33%), Query Frame = 3 
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G     H   + A+ A +++L+G  E YRI
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRI 178
[Close]
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.595e-23
Identity = 60/132 (45.45%), Postives = 77/132 (58.33%), Query Frame = 3 
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G     H   + A+ A ++VL+G  E YR+
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRV 178
[Close]
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.595e-23
Identity = 60/132 (45.45%), Postives = 77/132 (58.33%), Query Frame = 3 
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G     H   + A+ A ++VL+G  E YR+
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178
[Close]
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.595e-23
Identity = 60/132 (45.45%), Postives = 77/132 (58.33%), Query Frame = 3 
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G     H   + A+ A ++VL+G  E YR+
Sbjct:   50 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 177
[Close]
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.595e-23
Identity = 60/132 (45.45%), Postives = 77/132 (58.33%), Query Frame = 3 
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G     H   + A+ A ++VL+G  E YR+
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178
[Close]
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.595e-23
Identity = 60/132 (45.45%), Postives = 77/132 (58.33%), Query Frame = 3 
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G     H   + A+ A ++VL+G  E YR+
Sbjct:   50 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 177
[Close]
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 60/133 (45.11%), Postives = 77/133 (57.89%), Query Frame = 3 
Query:  291 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXH---LVFAVIAEIVLVGGAEYYRI 680
            ++YGP+R  +L  G    +  P YLTGE PGDYG+D  GLS  P+ F +Y+  ELIHARWAMLGA G   PE   K G   G EAVWFK GA +     L+Y G     H   +V     +++L+G  E YR+
Sbjct:   35 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRV 164
The following BLAST results are available for this feature:
BLAST of FC920723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB22_ORYSJ1.987e-2346.97Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SILPR1.987e-2345.45Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_ORYSJ1.987e-2346.97Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2A_SPIOL2.595e-2345.45Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB27_TOBAC2.595e-2345.45Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_TOBAC2.595e-2345.45Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_NICPL2.595e-2345.45Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB24_TOBAC2.595e-2345.45Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC2.595e-2345.45Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2_CHLRE3.389e-2345.11Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionC32012C02EF RVDevelop1 Citrus clementina cDNA clone C32012C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920723 ID=FC920723; Name=FC920723; organism=Citrus clementina; type=EST; length=711bp
CATGCCGGGGAGGATCATCTTCACCATTTCATCTCTCTACACAAAGAAGC
AGCAGCAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCCCCCACTCC
TGCTGCCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCA
GCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTC
AAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTC
TAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATG
GTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAG
ATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCC
TTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATG
AATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATT
CCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTG
GTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCG
GAAAGAACATCCCAANTCACCTTGTTTTTGCTGTCATTGCTGAGATTGTT
CTTGTAGGTGGTGCTGAATATTATAGAATCCCAACGGTTTGGATTTGGAG
GACAAGCTCAC
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