FC920723

Overview
NameFC920723
Unique NameFC920723
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920723_ssr48 microsatellite FC920723_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9360 contig Ccv1_Contig9360:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 59/132 (44.70%), Postives = 77/132 (58.33%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G     H   + A+ A +++L+G  E YR+
Sbjct:   49 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRV 176          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 62/132 (46.97%), Postives = 78/132 (59.09%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYG DR  FL        + P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G I PE  +K G   G EAVWFK GA +     L+Y G     H   + A+ A ++VL+G  E YR+
Sbjct:   48 WYGADRPKFLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRV 175          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23
Identity = 57/132 (43.18%), Postives = 76/132 (57.58%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXH---LVFAVIAEIVLVGGAEYYRI 680
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G     H   ++     +++L+G  E YR+
Sbjct:   48 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRV 175          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23
Identity = 59/132 (44.70%), Postives = 77/132 (58.33%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVW K G+ +     L+Y G     H   + A+ A +++L+G  E YR+
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRV 178          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23
Identity = 60/132 (45.45%), Postives = 76/132 (57.58%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L Y G     H   + A+ A ++VL+G  E YR+
Sbjct:   48 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 175          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23
Identity = 60/132 (45.45%), Postives = 76/132 (57.58%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P  F+K +  E+IH RW MLGA G + PE F + G   G EAVWFK G+ +     L+Y G     H   + A+ A ++VL+G  E YR+
Sbjct:   50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 177          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.780e-23
Identity = 60/132 (45.45%), Postives = 78/132 (59.09%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYGPDR  +L        +IP YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G   PE   K G   G EAVWFK G+ +     L+Y G     H   + A+ A ++VL+G  E YR+
Sbjct:   49 WYGPDRPKYLGPF---SEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRV 176          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.549e-23
Identity = 59/132 (44.70%), Postives = 77/132 (58.33%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EA WFK G+ +     L+Y G     H   + A+ A +++L+G  E YRI
Sbjct:   29 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRI 156          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 59/132 (44.70%), Postives = 76/132 (57.58%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYGPDR  +L        E P YLTGE PGDYG+D   LS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G     H   + A+ A ++VL+G  E YR+
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 59/132 (44.70%), Postives = 77/132 (58.33%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYGP+R  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G     H   + A+ A ++VL+G  E YR+
Sbjct:   51 WYGPNRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178          
The following BLAST results are available for this feature:
BLAST of FC920723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB22_TOBAC3.389e-2344.70Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_LEMGI3.389e-2346.97Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_APIGR4.426e-2343.18Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PETSP4.426e-2344.70Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB22_HORVU4.426e-2345.45Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_PETSP4.426e-2345.45Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB215_PEA5.780e-2345.45Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB21_SOYBN7.549e-2344.70Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB25_PETSP1.682e-2244.70Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB23_NICPL1.682e-2244.70Chlorophyll a-b binding protein C, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC32012C02EF RVDevelop1 Citrus clementina cDNA clone C32012C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920723 ID=FC920723; Name=FC920723; organism=Citrus clementina; type=EST; length=711bp
CATGCCGGGGAGGATCATCTTCACCATTTCATCTCTCTACACAAAGAAGC
AGCAGCAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCCCCCACTCC
TGCTGCCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCA
GCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTC
AAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTC
TAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATG
GTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAG
ATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCC
TTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATG
AATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATT
CCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTG
GTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCG
GAAAGAACATCCCAANTCACCTTGTTTTTGCTGTCATTGCTGAGATTGTT
CTTGTAGGTGGTGCTGAATATTATAGAATCCCAACGGTTTGGATTTGGAG
GACAAGCTCAC
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