FC920723

Overview
NameFC920723
Unique NameFC920723
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920723_ssr48 microsatellite FC920723_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9360 contig Ccv1_Contig9360:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 60/132 (45.45%), Postives = 76/132 (57.58%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXH---LVFAVIAEIVLVGGAEYYRI 680
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EA WFK G+ +     L+Y G     H   L+     ++VL+G  E YRI
Sbjct:   50 WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRI 177          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.197e-22
Identity = 58/132 (43.94%), Postives = 77/132 (58.33%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAV-IAEIVLVGGAEYYRI 680
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G     H   + A+  A++VL+G  E YR+
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRV 176          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.197e-22
Identity = 58/132 (43.94%), Postives = 78/132 (59.09%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            W+GPD   +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G     H   + A+ A +++L+G  E YRI
Sbjct:   12 WHGPDGVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRI 139          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 60/132 (45.45%), Postives = 75/132 (56.82%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYG DR  FL        E P YL GE  GDYG+D  GLS  P+ F++ +  E+IHARWAMLGA G + PE   K G   G EAVWFK GA +     L+Y G     H   + A+ A ++VL+G  E YR+
Sbjct:   52 WYGADRPKFLGPF---SGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 179          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 59/132 (44.70%), Postives = 79/132 (59.85%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYG DR ++L  G    S  P YL+GE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   K G   G EAVWFK G+ +     L+Y G     H   + A+ A +++L+G  E YR+
Sbjct:   49 WYGSDRPLYL--GPFSGSP-PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRV 176          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 58/132 (43.94%), Postives = 77/132 (58.33%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G     H   + A+ A ++VL+G  E YR+
Sbjct:   21 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRV 148          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 58/132 (43.94%), Postives = 77/132 (58.33%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G     H   + A+ A ++VL+G  E YR+
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRV 176          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 57/132 (43.18%), Postives = 77/132 (58.33%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G     H   + A+ A +++L+G  E YR+
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 177          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 57/132 (43.18%), Postives = 77/132 (58.33%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G     H   + A+ A +++L+G  E YR+
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 177          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.893e-22
Identity = 59/132 (44.70%), Postives = 77/132 (58.33%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G     H   + AV A ++VL+G  E YR+
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRV 176          
The following BLAST results are available for this feature:
BLAST of FC920723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB21_WHEAT1.682e-2245.45Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB26_PETSP2.197e-2243.94Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB21_PEA2.197e-2243.94Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2_PHYPA2.869e-2245.45Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_POLMU2.869e-2244.70Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB25_SOLLC3.747e-2243.94Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB24_SOLLC3.747e-2243.94Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB22_ARATH3.747e-2243.18Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH3.747e-2243.18Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB23_TOBAC4.893e-2244.70Chlorophyll a-b binding protein 36, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC32012C02EF RVDevelop1 Citrus clementina cDNA clone C32012C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920723 ID=FC920723; Name=FC920723; organism=Citrus clementina; type=EST; length=711bp
CATGCCGGGGAGGATCATCTTCACCATTTCATCTCTCTACACAAAGAAGC
AGCAGCAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCCCCCACTCC
TGCTGCCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCA
GCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTC
AAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTC
TAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATG
GTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAG
ATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCC
TTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATG
AATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATT
CCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTG
GTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCG
GAAAGAACATCCCAANTCACCTTGTTTTTGCTGTCATTGCTGAGATTGTT
CTTGTAGGTGGTGCTGAATATTATAGAATCCCAACGGTTTGGATTTGGAG
GACAAGCTCAC
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