FC920723

Overview
NameFC920723
Unique NameFC920723
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920723_ssr48 microsatellite FC920723_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9360 contig Ccv1_Contig9360:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 58/132 (43.94%), Postives = 76/132 (57.58%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYGPDR  +L       ++ P YL GE PGDYG+D  GLS  P+ F+K +A E+IH RWAMLGA G I PE   K+      E VWFK G+ +     L+Y G     H   + AV+  ++VL+G  E +RI
Sbjct:   47 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 175          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 57/132 (43.18%), Postives = 76/132 (57.58%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G     H   + A+ A +++L+G  E YR+
Sbjct:   49 WYGSDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 176          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 62/133 (46.62%), Postives = 78/133 (58.65%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYGPDR    P+ L   SE  P YLTGE PGDYG+D   +S  P+ F+K +  E+IH RWAMLGA G + PE   K G   G EAVWFK GA +     L+Y G     H   + A+ A ++VL+G  E YR+
Sbjct:   50 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFG-EAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRV 177          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.066e-21
Identity = 55/132 (41.67%), Postives = 76/132 (57.58%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYGPDR  +L       ++ P YL GE PGDYG+D  GLS  P+ F++ +A E+IH RWAMLGA G + PE   K+      E VWFK G+ +     L+Y G     H   + AV+  +++L+G  E +RI
Sbjct:   50 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI 178          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 53/114 (46.49%), Postives = 70/114 (61.40%), Query Frame = 3
Query:  348 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+ WAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G     H   + A+ A ++VL+G  E YRI
Sbjct:    5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRI 117          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 53/134 (39.55%), Postives = 73/134 (54.48%), Query Frame = 3
Query:  291 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXH---LVFAVIAEIVLVGGAEYYRI 680
            ++YGPD       G   + + P   TGE PGDYG+D  GLS  P+ F +Y+  ELIHAR  +LGA G + PE   ++ G   G  A+WFK GA +     LNY G     H   +V  +  ++VL+G  E YR+
Sbjct:   56 QFYGPDAT----SGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRV 185          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 54/132 (40.91%), Postives = 74/132 (56.06%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYG DR ++L  G L  S  P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWA+    G + PE   + G   G E VWFK G+ +     L++ G     H   + A+ A ++VL+G  E Y +
Sbjct:   48 WYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFG-EGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHV 175          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.599e-18
Identity = 51/114 (44.74%), Postives = 66/114 (57.89%), Query Frame = 3
Query:  348 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAV-IAEIVLVGGAEYYRI 680
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+R AM  A G I PE  +  G   G EAVWFK GA +     L+Y G     H   + A+   +++L+G  E YRI
Sbjct:   68 EWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRI 180          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.190e-17
Identity = 54/132 (40.91%), Postives = 71/132 (53.79%), Query Frame = 3
Query:  294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680
            WYGPDR  +L        E P YLTGE          GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G     H   + A+ A +++L+G  E YRI
Sbjct:   48 WYGPDRVKYLGPF---SGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRI 167          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 47/122 (38.52%), Postives = 60/122 (49.18%), Query Frame = 3
Query:  303 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHLVFAVIAEIVLVGGAE 668
            PDR ++ P      S  P +L G +PGD+G+DP GL+  P+     Q  EL+H RWAMLGAAG  IPE   K G    P   W+  G      +T   F            I E+VL+G AE
Sbjct:   63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVLIGWAE 165          
The following BLAST results are available for this feature:
BLAST of FC920723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB23_SOLLC8.347e-2243.94Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_SINAL8.347e-2243.18Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_PINTH8.347e-2246.62Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_HORVU7.066e-2141.67Chlorophyll a-b binding protein of LHCII type III,... [more]
CB22_CUCSA1.574e-2046.49Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_DUNSA5.064e-1939.55Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB48_MAIZE2.513e-1840.91Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2_MALDO5.599e-1844.74Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB22_SOYBN6.190e-1740.91Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB12_SOLLC2.202e-1438.52Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC32012C02EF RVDevelop1 Citrus clementina cDNA clone C32012C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920723 ID=FC920723; Name=FC920723; organism=Citrus clementina; type=EST; length=711bp
CATGCCGGGGAGGATCATCTTCACCATTTCATCTCTCTACACAAAGAAGC
AGCAGCAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCCCCCACTCC
TGCTGCCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCA
GCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTC
AAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTC
TAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATG
GTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAG
ATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCC
TTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATG
AATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATT
CCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTG
GTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCG
GAAAGAACATCCCAANTCACCTTGTTTTTGCTGTCATTGCTGAGATTGTT
CTTGTAGGTGGTGCTGAATATTATAGAATCCCAACGGTTTGGATTTGGAG
GACAAGCTCAC
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