FC920723
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22 Identity = 58/132 (43.94%), Postives = 76/132 (57.58%), Query Frame = 3 Query: 294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680 WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+ E VWFK G+ + L+Y G H + AV+ ++VL+G E +RI Sbjct: 47 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 175
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22 Identity = 57/132 (43.18%), Postives = 76/132 (57.58%), Query Frame = 3 Query: 294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680 WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G H + A+ A +++L+G E YR+ Sbjct: 49 WYGSDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 176
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22 Identity = 62/133 (46.62%), Postives = 78/133 (58.65%), Query Frame = 3 Query: 294 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680 WYGPDR P+ L SE P YLTGE PGDYG+D +S P+ F+K + E+IH RWAMLGA G + PE K G G EAVWFK GA + L+Y G H + A+ A ++VL+G E YR+ Sbjct: 50 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFG-EAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRV 177
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.066e-21 Identity = 55/132 (41.67%), Postives = 76/132 (57.58%), Query Frame = 3 Query: 294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680 WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G + PE K+ E VWFK G+ + L+Y G H + AV+ +++L+G E +RI Sbjct: 50 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI 178
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20 Identity = 53/114 (46.49%), Postives = 70/114 (61.40%), Query Frame = 3 Query: 348 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680 E P YLTGE PGDYG+D GLS P+ F+K + E+IH+ WAMLGA G + PE ++ G G EAVWFK G+ + L+Y G H + A+ A ++VL+G E YRI Sbjct: 5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRI 117
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19 Identity = 53/134 (39.55%), Postives = 73/134 (54.48%), Query Frame = 3 Query: 291 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXH---LVFAVIAEIVLVGGAEYYRI 680 ++YGPD G + + P TGE PGDYG+D GLS P+ F +Y+ ELIHAR +LGA G + PE ++ G G A+WFK GA + LNY G H +V + ++VL+G E YR+ Sbjct: 56 QFYGPDAT----SGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRV 185
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18 Identity = 54/132 (40.91%), Postives = 74/132 (56.06%), Query Frame = 3 Query: 294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680 WYG DR ++L G L S P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA+ G + PE + G G E VWFK G+ + L++ G H + A+ A ++VL+G E Y + Sbjct: 48 WYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFG-EGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHV 175
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.599e-18 Identity = 51/114 (44.74%), Postives = 66/114 (57.89%), Query Frame = 3 Query: 348 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAV-IAEIVLVGGAEYYRI 680 E P YLTGE PGDYG+D GLS P+ F+K + E+IH+R AM A G I PE + G G EAVWFK GA + L+Y G H + A+ +++L+G E YRI Sbjct: 68 EWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRI 180
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.190e-17 Identity = 54/132 (40.91%), Postives = 71/132 (53.79%), Query Frame = 3 Query: 294 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHL--VFAVIA-EIVLVGGAEYYRI 680 WYGPDR +L E P YLTGE GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G H + A+ A +++L+G E YRI Sbjct: 48 WYGPDRVKYLGPF---SGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRI 167
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14 Identity = 47/122 (38.52%), Postives = 60/122 (49.18%), Query Frame = 3 Query: 303 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHLVFAVIAEIVLVGGAE 668 PDR ++ P S P +L G +PGD+G+DP GL+ P+ Q EL+H RWAMLGAAG IPE K G P W+ G +T F I E+VL+G AE Sbjct: 63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVLIGWAE 165 The following BLAST results are available for this feature:
BLAST of FC920723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920723 ID=FC920723; Name=FC920723; organism=Citrus clementina; type=EST; length=711bpback to top |