FC920723

Overview
NameFC920723
Unique NameFC920723
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920723_ssr48 microsatellite FC920723_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9360 contig Ccv1_Contig9360:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 46/122 (37.70%), Postives = 60/122 (49.18%), Query Frame = 3
Query:  303 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHLVFAVIAEIVLVGGAE 668
            PDR ++ P      S  PE+L G +PGD+G+DP GL   P+        EL+H+RWAMLGAAG  IPE   K G    P   W+  G      +T   F            + E+VL+G AE
Sbjct:   63 PDRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPS--WYTAGEQEYFTDTTTLF------------VIELVLIGWAE 165          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 3
Query:  354 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 563
            P+YLTG + GD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F K G    PE  W+  G
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPE--WYDAG 131          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 3
Query:  354 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 563
            P YLTG +PGD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F   G    P+  W+  G
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG 130          
BLAST of FC920723 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 37/109 (33.94%), Postives = 53/109 (48.62%), Query Frame = 3
Query:  354 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPXHLVFAVIA-EIVLVGGAEYYR 677
            P YL G  PGD+G+D  GL + P +  +Y+  ELIH RWAML   G I+PEA      N      W       + G    Y G+ +P   +  ++A E + +   E+ R
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGL--GNWVKAQEW-----AAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR 157          
The following BLAST results are available for this feature:
BLAST of FC920723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB12_PETHY2.875e-1437.70Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_ARATH1.578e-1245.71Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA7.830e-1244.29Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB11_SOLLC3.886e-1133.94Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC32012C02EF RVDevelop1 Citrus clementina cDNA clone C32012C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920723 ID=FC920723; Name=FC920723; organism=Citrus clementina; type=EST; length=711bp
CATGCCGGGGAGGATCATCTTCACCATTTCATCTCTCTACACAAAGAAGC
AGCAGCAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCCCCCACTCC
TGCTGCCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCA
GCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTC
AAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTC
TAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATG
GTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAG
ATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCC
TTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATG
AATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATT
CCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTG
GTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCG
GAAAGAACATCCCAANTCACCTTGTTTTTGCTGTCATTGCTGAGATTGTT
CTTGTAGGTGGTGCTGAATATTATAGAATCCCAACGGTTTGGATTTGGAG
GACAAGCTCAC
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